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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg...

Basic information

species Zea mays
transcript GRMZM2G093902_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgat-gtgcatt-tcttagttgttgtagacttgtagtcactatcacagcag-gctcgg
| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || ||||| ||||||||  || |      |||  |   | |    ||   || ||  |||    |    |  ||||    |     | ||  | ||   |  || |   | | ||| 
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcca---tcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G33240.1 (Glycine max), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgta-gtcactatcacagcaggctcgg--
| ||||| || || |||||||| |||||| | ||| | || |||||||| |||||||||||||| ||||||||||| || || || || || ||  | ||||    ||  |    |    | ||||     ||  ||| | |        | |     || ||| || |  | |||||  | |||  |  |        |   
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCTTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTCCTCGGCGGCCTCGCTGTTCGCAGgtataacatattactctgctaatgcatt---cttatatatcaggcaaggattctagctttggttattatgaatttgtacattacttgcttaatgtttatgttt

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtg-catttcttagttgttgtagactt-gtagtcactatcacagcaggctcgg
| ||||| || || |||||||| |||||| | |||||||| |||||||| |||||||||||||| |||||||||||||| ||||| || || ||  | ||||    ||  |    |    | ||||     ||  | |||  || |||| |  ||||    |    || |||  || ||  | || |            |  
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTCTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCTGTTCGCAGgtataacatgttactctgctaatgcattcttctagtttgt-gatgtgatttatcattaggcaaggattttaggtttagttattacgaatttgttgattact-

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G33230.1 (Glycine max), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacatt-gcacaacactgctatgt-taatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg
| ||||| || || |||||||| |||||| | ||||| || |||||||| |||||||||||||| |||||||||||||| ||||| || |||||  | |||| |     ||| ||   | |||    ||    |   || | |  ||  || |  || ||||| ||   |  | | |   |      |   |      |   
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCCGTTCGCAGgtaattatattactctgcaaattcattcatttgtataatatatcttaatatcttgatatcttaatttcagatgtcattaggcatgggttttaattttatt--

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttct-tagttgttgtagacttgtagtcactatcacagcaggctcgg-
|||| || || || || ||||| |||||  | || || ||||| ||||| ||||| ||||| || ||||||||||| ||||||||||| || ||| | ||||     | | |||   ||  |   | ||   ||  || ||  | | |  ||  |   |    ||  ||| |   || |   ||| |   |    |||    
TTGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATTGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTTGGTGGACTCGCTGTGCGCAGgt-gtatattcattttttagttgataaaaatatgtaatttttttttaaattgtttcattgcgattcatgtcgttgtg-aaaaactgtagaaaattgctgtcg

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttg-tagtcactatcacagcaggctcgg
|||||||||| || |||||||| |||||| | || ||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| || || ||  | ||||    || || |    ||  ||       | |        | |    |    |||  |||| |    | | | |  |||| |     | || |  |    
TTGAGCTCTATGCTGAGAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGgtacgacatttctctagtatgtttttgtgtattctctctcaattgctgttgttattgtttagcttacttggtcctaatagtgaaatgtataggatacaac-

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg--
||||||| || || |||||||| |||||| | || ||||| ||||| || ||||| |||||  |||| ||||||||||||||||| || || ||  | ||||    || || |    | | ||   | |   | || ||||   || |  |   ||| | | | |     || ||| |     ||  |  | |     |   
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacatttctctagttcgtt-tgctatgttactttgtttg-atcagtttagtttatcattagagactgatttggataggttactagtgtatataagcat

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcac-aacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg-
| ||||| || || ||||| || |||||  | |||||||| |||||||| ||||| ||||| || || |||||||||||||| ||||| || ||  | |||| |  ||  |  |   ||  |      ||    | |    ||  ||| |      | |  |||  ||  | |   ||    |  || |  | |     |  
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatac--agtattttcaaatcggtttgaatcattaatggacctatgaa

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtc---actatcacagcaggctcgg
| ||||| || || ||||| || |||||| | || ||||| |||||||| ||||| ||||| ||||| |||||||||||||| || || || ||  | ||||   | |   |        |||  |      |  | |  |||||   |||   ||   | ||| | |   | ||  |||    | |||      |   |   
TGGAGCTTTATGCTGAGAAAGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCACTACGTTACAAGCTTCTTGGAGGGCTTGCTGTTCGCAGgt-gggtatcaacgtttccaattttattgtcatattttcataatacagtgtatcttaaatggttatgg--aatttacagtttgtagtatgctgatatatttaa

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: EDP07493 (Chlamydomonas reinhardtii), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttctt--agttgttgtagacttgtagtcactatcacagcaggctcgg-
||||||| ||||| |||||||| | | ||||||| || |||||||| ||||||||||||||||| ||||||||||| || ||||| || |||||| |  ||| |    ||        |   ||        |||  |||  |    |   |||   |    |   ||||  |  | | |        ||| | |  | |   
TTGAGCTGTACGCTGAGAAGGTCAGCGACCGTGGTCTGTGCGCCATCGCCCAGGCCGAGTCGCTGCGCTACAAGCTGCTGGGTGGCCTGGCCGTGCGCCGgtgagcagctgcgaggagagggtgt-tggggttgcggtgtagagggaaacggcaggaccgcgaagcgttg-ggggtggcaagggagggcac-gaaaccgcatt

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg--------------------------------------
||||| | || || ||||||||||||||| | || || ||||||||||| ||||| |||||||| || |||||||||||||| || || || ||| | ||||  ||      | || | | |   |  |  |   | | || ||  | ||  | ||  || |    |     |   |  | | ||    | |||  |||                                       
TTGAGTTGTATGCCGAGAAGGTGAACAACAGGGGTCTGTGCGCCATTGCTCAGGCTGAGTCGCTGCGGTACAAGCTTCTTGGAGGTCTTGCTGTGCGCAGgt-gcgatgggttgccattcgtgtaattatgcccgtgtattcatcagttgcactttgatttgaatctagcttcccatgttaagtact-tatcagaatcgatggtgtatgacgttttcttttttgtatgacgggtacag

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccc-----tacattgcacaac-actgctatgttaatatgatgtgcatttcttagttgttgtagactt----gtag-tca--ctatcacagcaggctcgg----------------------
| ||| | ||||| |||||||| |||||| | || || ||||| ||||| ||||| ||||| || || ||||||||||||||||| || |||||  | ||||  || ||||           |  || |   ||  || |   |||   | | ||||   || |  |  | || ||  |||    |||| |||   | || || | | |                          
TGGAGTTGTACGCTGAGAAGGTTAACAACAGAGGTCTATGCGCTATTGCGCAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtc-cgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgt-atgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttag

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcaca-acactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg------------------------------------------
| ||| | ||||| |||||||||||||||||||| || ||||| ||||| || || ||||| || || ||||||||||| || || || || ||  | |||||  |  |||     |||||    | | ||  |   |||  |||   || |       | | | ||  | || | |||   | | |   |||    | ||                                          
TGGAGTTGTACGCTGAGAAGGTGAACAACCGTGGTCTGTGCGCTATTGCGCAAGCTGAGTCTCTTCGATACAAGCTTCTCGGAGGTCTTGCTGTACGCAGgtt-tgtgctt-----ctacacaaaatatacttttaaatggcaattaaatttattcaattaaatggtaattgaat-gtatgaattgttttagccaaattggaaaaaagggatactataagttcttgaacctgcggttttttag

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgtt-acgcacttattccctacattgcac---aacactgctatgttaatatgatgtgc-atttcttagttgttgtagacttgtagtcacta----tcacagcaggctcgg------------------------------------------
| ||| | ||||| ||||||||||||||| | || || || ||||||||||||||||| ||  | || |||||||| || || || || || ||  | |||||  |    |||||   |   ||       |  | |   || || || | || |      ||       ||  |    || |||    |    |||  || ||||  |                                          
TGGAGTTGTACGCTGAGAAGGTGAACAACAGGGGTCTGTGTGCCATTGCCCAGGCCGAATCCTTGCGATACAAGCTCCTCGGAGGTCTTGCGGTTCGCAGgtttgcttttttattggatttgttttgttttaggattaggatattcattttatttcttgactccagaccctttcactggtgaagtggaaaatgctcaatgctggcttagggttttttttgctgatacgtattaaaaattgtggatttacag

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgt-tacgcact-tattccctaca--ttgcacaacactgctatgttaat--atgatgtgcatttctta-gttgttg--tagacttgtagtcactatcacagcaggctcgg--------------------------
| ||| | ||||| ||||||||||||||||| || || ||||||||||||||||| |||||||| || ||||| || || ||||| || || ||  | |||| |  ||    |||    || |  ||| || |  | ||  | ||  |  || |  |  ||||  || |  |||   |   | |  ||     | |  | |   ||                             
TGGAGTTGTACGCCGAGAAGGTGAACAACCGGGGTCTGTGCGCCATTGCCCAGGCTGAGTCGCTGCGATACAAACTCCTGGGTGGTCTCGCTGTTCGCAGgtgtgtgcctcgtatctattagactttgtactaatccgcactattgcttgatcaccttgattttctacgaggttaactgcgcgttcagagctcagcgtatcgttctgatgtgctgatcttaaatctgaacgctag

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcac-------------ttattccctacattgcacaacactg---ctatgttaatatgatgtgcattt--cttagttgttgtagacttgtagtcactatcac--agcaggctcgg---------------------------------
||||| | ||||| || ||||| |||||| | ||||| ||||||||||| |||||||||||  | || |||||||||||||| || || |||||| | |||||     |             | ||   |||  |  |  | |  ||   || ||  |   | | | |  |||  |||  ||||   | | || |  ||  | ||    || | | | ||                                 
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg
| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||  | || |||||||| || || ||||| |||||  |||||||      || || | |   | ||       ||||  |                                                             
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggcct--tggtgctcag-------------------------------------------------------------

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg
| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||  | || |||||||| || || ||||| |||||  |||||||  |   ||  |  ||   |||         ||  || |  || || || |  | ||| ||                                     
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtt-tgatttttctttcttttttg---------gccttggtgctaaga-gttctctacttcgtcag----------------------------------

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg
| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||  | || |||||||| || || ||||| |||||  |||||||      || || | |   | ||       |||||    |   |  | | | ||| | ||                                      
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggcct--tggtgcta----agagttctctac-tttgtcag--------------------------------------

upper sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 5'ss of exon 3
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcac-aacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg
| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||  | || |||||||| || || ||||| |||||  |||||||      || || | |   | ||       ||   |  |   ||    ||                                                 
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggccttggtgctaagacttctctacttcgtcag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342788|gb|DN209761.1|DN209761
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|211411263|gb|FK965131.1|FK965131
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|74235988|gb|DT643902.1|DT643902
EST:     CTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|74240382|gb|DT648296.1|DT648296
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|148973769|gb|EE024903.2|EE024903
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|16917288|gb|BM073218.1|BM073218
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|211413802|gb|FK965136.1|FK965136
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|4646893|gb|AI621968.1|AI621968
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|50328603|gb|CO523729.1|CO523729
EST:     CTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|60347103|gb|DN214076.1|DN214076
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|76013473|gb|DT940643.1|DT940643
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|211411261|gb|FK965129.1|FK965129
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|4647182|gb|AI622257.1|AI622257
EST:     CAGGCCGAGTCGNTACGCTNCAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|60397108|gb|DN229927.1|DN229927
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88757758|gb|DY541899.1|DY541899
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|12971830|gb|BG267679.1|BG267679
EST:     CTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|78109693|gb|DV528109.1|DV528109
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|211053864|gb|FL037807.1|FL037807
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|60398401|gb|DN231217.1|DN231217
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|50339749|gb|CO534875.1|CO534875
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|60346506|gb|DN213479.1|DN213479
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|74244112|gb|DT652026.1|DT652026
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
EST: gi|78024902|gb|DV493289.1|DV493289
EST:     CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAG                         GGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcact ... cgattttcagGGCATGTTATGGTGTTCTCAGGTTTGTCATGGAGAGTGGTGCTAAGGGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA