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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttctcgagtccgtcttctcgtttcttcttctgagggtaacaacaaaaggatcattgatcaaatcaccgtcaatactctgctttgataatgcag

Basic information

species Zea mays
transcript GRMZM2G093359_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211519253|gb|FK974838.1|FK974838
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGG
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGG
EST: gi|211514527|gb|FK974805.1|FK974805
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211519243|gb|FK974828.1|FK974828
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|149090120|gb|EE179418.2|EE179418
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211516881|gb|FK974817.1|FK974817
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211153846|gb|FK974847.1|FK974847
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211519248|gb|FK974833.1|FK974833
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCAC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCAC
EST: gi|211516878|gb|FK974814.1|FK974814
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCNACGGTTGGAGGTTACACAGATTT
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATC-ACGGTTGGAGGTTACACAGATTT
EST: gi|149089319|gb|EE178541.2|EE178541
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514522|gb|FK974800.1|FK974800
EST:     AGTCTTGCGTGACAACGAAGCCCTGGAGGAATAAATGTCTTATTCCAATG                         AGTGANTATCGAGATGGTTCTACCAATCACCGGTTGGAGGTTACACAGGAT
genomic: AGTCTTGCGTGACAACGAAGCCCTG-AGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGA-TATCGAGATGGTTCTACCAATCAC-GGTTGGAGGTTACACAG-AT
EST: gi|211153843|gb|FK974844.1|FK974844
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|149008951|gb|EE041170.2|EE041170
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211516884|gb|FK974820.1|FK974820
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|29168004|gb|CB411264.1|CB411264
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211153842|gb|FK974843.1|FK974843
EST:     CAGTCTTGCGTGACAACGAAGCNCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGAYGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211153845|gb|FK974846.1|FK974846
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|149104775|gb|EE290237.2|EE290237
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|86466218|gb|DY232591.1|DY232591
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514525|gb|FK974803.1|FK974803
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211516888|gb|FK974824.1|FK974824
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTT
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTT
EST: gi|211512173|gb|FK974791.1|FK974791
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATG
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATG
EST: gi|211519250|gb|FK974835.1|FK974835
EST:     AGTCTTGCGTGANCA-CGAAGCCCTGAGGGATAAATGTCTTATTCCCATG                         AGTGATATCGAGATGGTTCTACCAATCGACGGTTGGAGGTTACACAGATTT
genomic: AGTCTTGCGTGA-CAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATC-ACGGTTGGAGGTTACACAGATTT
EST: gi|211512171|gb|FK974789.1|FK974789
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514523|gb|FK974801.1|FK974801
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514526|gb|FK974804.1|FK974804
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCANCGGTTGGAGGTTACACAGATTT
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCA-CGGTTGGAGGTTACACAGATTT
EST: gi|149094603|gb|EE180134.2|EE180134
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|101398071|gb|EB820910.1|EB820910
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAGTCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211516883|gb|FK974819.1|FK974819
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|93015898|gb|EB641418.1|EB641418
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514531|gb|FK974809.1|FK974809
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGARATGGTTCTACCAATCACGGTT
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTT
EST: gi|211512177|gb|FK974795.1|FK974795
EST:     CAGTCTTGCGTGACAACGAAGCCGTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211516875|gb|FK974811.1|FK974811
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACMGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211516879|gb|FK974815.1|FK974815
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211519246|gb|FK974831.1|FK974831
EST:     CAGTCTTGCGTTACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCA
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCA
EST: gi|211516886|gb|FK974822.1|FK974822
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|31350712|gb|CD435069.1|CD435069
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211512168|gb|FK974786.1|FK974786
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514532|gb|FK974810.1|FK974810
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514520|gb|FK974798.1|FK974798
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|31355275|gb|CD439632.1|CD439632
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211519245|gb|FK974830.1|FK974830
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|71424525|gb|DR806344.1|DR806344
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211153841|gb|FK974842.1|FK974842
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCAC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCAC
EST: gi|148983250|gb|EE029217.2|EE029217
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211514529|gb|FK974807.1|FK974807
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTA
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTA
EST: gi|89253028|gb|DY624814.1|DY624814
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211516880|gb|FK974816.1|FK974816
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTC
EST: gi|211512167|gb|FK974785.1|FK974785
EST:     CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTMTTATTCCAATG                         AGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGAT
genomic: CAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 61

CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGC


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 83

CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGC


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 38

CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 80

CCGACGAGCCAGTCTTGCGTGACAACGAAGCCCTGAGGAATAAATGTCTTATTCCAATGgtgagcttct ... gataatgcagAGTGATATCGAGATGGTTCTACCAATCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGC