Sequence
atgc intronic sequence ATGC exonic sequenceCTGGTAGAACAGAGAATCCACCGAGTCCTGGTTCACGGTGGAAGAAGGGAAAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgccttttgccattttcatgcatggaaatggattatattcacttcagtttgtatgctgattgaagagacggttttttgcaaatttacttgggctgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 3
CTGGTAGAACAGAGAATCCACCGAGTCCTGGTTCACGGTGGAAGAAGGGAAAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgccttttgccattttcatgcatggaaatggattatattcacttc-agtttgtatgctgattgaagagacggtttt--ttgcaaattta-cttgggctgtt----
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CTGGTAGAGTAGAAAATCCAACTAGTCCTGGATCACGGTGGAAGAAGGGAAAGCTTGTCGGCCGTGGGACATTTGGCCATGTATACATTGGCTTTAACAGgtatgcccttt-------cgatgctcggaattggttgatgttcatttttaatttcgatgcaaagcaca-atatggttttcatcattaataaatcctacaatggtacta
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G42960.1 (Glycine max), 5'ss of exon 2
CTGGTAGAACAGAGAATCCACCGAGTCCTGGTTCACGGTGGAAGAAGGGAAAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgcctt--ttgccattttca-tgcatggaaatggattatattcacttcagtttgtatgctgattgaagagacggttttttgcaaatttacttgggctgtt
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CCAGCATAGCAGAAAATCTAACAAGCCCTGGCTCACGCTGGAAAAAGGGACAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtatttagtaattgttattccaagttcatatttatg---tatattttctacagttgggcctataataatattattcgtattaggatttttttttttttgtatg
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 5
CTGGTAGAACAGAGAATCCACCGAGTCCTGGTTCACGGTGGAAGAAGGGAAAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgccttttgccattttcatgcatggaaatggattatattcacttcagtttgtatgctgattgaagagacggtt--ttttgcaaatttacttgggctgtt--
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CCAGCATAGCAGAAAATCTAACATATCCTGGCTCGCGCTGGAAAAAGGGGCAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGgtat----tttgtaattgttattcctagttcatatttatgtatattttctacagttgggtctatgatgatattattcgtattaggatttttttttgtatgcatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211515221|gb|FL355394.1|FL355394EST: AAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAG TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACCCTTTTCTCAGATGA
genomic: AAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgccttt ... tctatttcagTGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGTAGAACAGAGAATCCACCGAGTCCTGGTTCACGGTGGAAGAAGGGAAAACTGATTGGCCGTGGGACATTTGGCCATGTATATGCTGGTTTTAACAGgtatgccttttgccattttcatgcatggaaatggattatattcacttcagtttgtatgctgattgaagagacggttttttgcaaatttacttgggctgtt
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