1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGTTTTGGTTTTTGACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctgatatgataatcatcactgaaatctaggattgattgtaattactgaaacttgacaattctgttcag
species | Zea mays |
transcript | GRMZM2G093101_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACCCCTC-AAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTTCAATGTTAEST: gi|76288888|gb|DV028456.1|DV028456
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATTCCAATGTTA
EST: GACCCCTCCNAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTTCCA-TGTTACGCTCACCCATTATGAGEST: gi|71439022|gb|DR820072.1|DR820072
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATT-CCAATGTTACGCTCACCCATTATGAG
EST: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGTEST: gi|71446702|gb|DR827752.1|DR827752
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGT
EST: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGTEST: gi|149085557|gb|EE175068.2|EE175068
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGT
EST: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGTEST: gi|148938422|gb|EC882740.2|EC882740
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGT
EST: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGTEST: gi|149094916|gb|EE180497.2|EE180497
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGT
EST: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGTEST: gi|149086647|gb|EE176188.2|EE176188
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGT
EST: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAG GTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGT
genomic: GACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctg ... ttctgttcagGTGATCTTGGTCAGAGCTTTGATTCCAATGTTACGCTCACCCATTATGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGTTTTGGTTTTTGACCCCTCCAAAAAGCGGCCCAGATGTTCCATATACACTCGGTCTCATAGgtgcttcctgatatgataatcatcactgaaatctaggattgattgtaattactgaaacttgacaattctgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG