1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATGGCAATGGGAAGGCTGGGCGATCTGCCTCTTTGGTTCAGAAGTATGTGGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaactaatagctcatctcttctcatttatttagattctatgtggtttaatataccctatatcacagtttttttttctttcag
species | Zea mays |
transcript | GRMZM2G092497_T05 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|78109829|gb|DV528245.1|DV528245
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|28873635|gb|CB329598.1|CB329598
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|211528668|gb|FL445662.1|FL445662
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|71325873|gb|DR799620.1|DR799620
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|76913046|gb|DV164985.1|DV164985
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|91873568|gb|EB403525.1|EB403525
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTATTTGAGCTCCTTCTTEST: gi|71447185|gb|DR828235.1|DR828235
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTT
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|74238865|gb|DT646779.1|DT646779
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAGEST: gi|149074707|gb|EE163131.2|EE163131
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCEST: gi|89762158|gb|DY689885.1|DY689885
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTC
EST: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGACATGAAGGACAATG GGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
genomic: GGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaact ... tttctttcagGGGATAATGGAGCAGATTCATTAGTTGAGCTCCTTCTTACTTACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGCAATGGGAAGGCTGGGCGATCTGCCTCTTTGGTTCAGAAGTATGTGGACATGGGTTTCTCAGAAGAGATTGTTCTGAAGGCCATGAAGGACAATGgtacttaactaatagctcatctcttctcatttatttagattctatgtggtttaatataccctatatcacagtttttttttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG