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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGGCAGCAGCATTTGCAACGCGCCGGTTGTTATATACAAGCCAAGCGTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtgattactatataattatttttaattaacattgcacacttagtttgtcaccatgctgtatcttgatatcttcatagttaggctgaatgctca...

Basic information

species Zea mays
transcript GRMZM2G092120_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092120_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 5'ss of exon 3
GCAATGGCAGCAGCATTTGCAACGCGCCGGTTGTTATATACAAGCCAAGCGTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtgattactatataattatttttaattaacattgcacactta---gtttgtcaccatgctgtatcttga-----tatcttcatagttaggctgaatgctca
|||||||||||||||||||| || | ||| ||  ||||| | || ||||| |||||  |||| ||||| |||||||||||||||||||||||||  ||||||||||  | | |   || |||   || |   ||    || |  | |||   |||||     | ||   || || |     ||| |    || ||| ||||       
GCAATGGCAGCAGCATTTGCGACACACCGATTACTATATCCCAGTCAAGCATTTGACTTAATCCATTGTTCACGCTGCCGAATAAATTGGACCCACGATGgtgagcactcactttgatgtaaa-gttctacctttttttttcttagttatgcgtttgagcaaaggcaacatatttaaggagtatttaaggagctagtctga-------

upper sequence: GRMZM2G092120_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G34430.1 (Glycine max), 5'ss of exon 3
GCAATGGCAGCAGCATTTGCAACGCGCCGGTTGTTATATACAAGCCAAGCGTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgt--------gattactatataattatttttaatt------------aacattgcacacttagtttgtcacca--tgctgtatcttgatatcttcatagt-taggctgaatgctca-----------------------------------------------------------------------
|||||||||||||||||||| ||  | || ||||||||| |||| ||||| |||||  |  ||||||| ||||||||  |||| ||||||||  | ||||||  ||| |        | ||  | |  |||| || ||| |             || |||  |     || |   || ||  |  |  |   |   | ||  | | |  | | || | |  |                                                                        
GCAATGGCAGCAGCATTTGCTACTAGACGCTTGTTATATCCAAGTCAAGCTTTTGACTTGGTACATTGTTCACGCTGTAGAATTAATTGGACTAGAGATGgtatgcttttctctcttgtttgatgtgcaattgttcttagtatcaatgaggagaaaaattatatggagaggtctacaacagctaatcaacactagaaactagagaatgcatgttggaagtgccgcttttgttgctagtatgatttgtatacaccattatttgtgttatgatgcttaaacttacttgtgatgaag

upper sequence: GRMZM2G092120_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
GCAATGGCAGCAGCATTTGCAACGCGCCGGTTGTTATATACAAGCCAAGCGTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtgattactatataattatttttaattaa--cattgcacacttagtttgtcaccatgc-tgtatcttgata--tcttcatagttaggctgaatgctca
|| |||| ||||| |||||| || | ||||||||||||| ||||||| || |||||  | |||||||||||| | ||  |||| ||||||||||||||||||  ||     |  |  |   |||  | ||||  ||  | ||   || |||   ||     |    ||  | ||| ||  |||| |     | | || |      
GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaagaaatgactattggtaaatcttgagcacaaagatgcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211358804|gb|FL192107.1|FL192107
EST:     GTTTGATGTAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATG                         ATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACT
genomic: GTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtg ... ttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACT
EST: gi|211358802|gb|FL192105.1|FL192105
EST:     GTTTGATGTAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATG                         ATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACT
genomic: GTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtg ... ttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACT