1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACCGCTGTAGAGGCGCAGCCAGAGGCGGATGCTGTAGTCCTGTCTGTGGCTGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgtaaagcacagcctgcagttcagtcgtgtttttcatgaggcagatgataacaacactcttctttcactgtttgtag
species | Zea mays |
transcript | GRMZM2G091995_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|71766908|gb|DR964845.1|DR964845
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|71766908|gb|DR964845.1|DR964845
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|71768664|gb|DR966601.1|DR966601
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|71768664|gb|DR966601.1|DR966601
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|71768664|gb|DR966601.1|DR966601
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148964753|gb|EC906012.2|EC906012
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC ATGCCGTGCCACAGCAGGAACATCATGTTGTGGACCGATCACCACCTCAACEST: gi|94473274|gb|EB702232.1|EB702232
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtagATGCCGTGCCACAGCAGGAACATCATGTTGTGGACCGATCACCACCTCAAC
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|94473274|gb|EB702232.1|EB702232
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|94473274|gb|EB702232.1|EB702232
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211393824|gb|FK983472.1|FK983472
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: GCCAACGGCACATCTACTCTTGCTGTGGGAGC-TGCCACCCCTGATGACC GEST: gi|211393824|gb|FK983472.1|FK983472
genomic: GCCAACGGCACATCTACTCTTGCTGTGG-AGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: GCCAACGGCACATCTACTCTTGCTGTGGGAGC-TGCCACCCCTGATGACC GEST: gi|211393824|gb|FK983472.1|FK983472
genomic: GCCAACGGCACATCTACTCTTGCTGTGG-AGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: GCCAACGGCACATCTACTCTTGCTGTGGGAGC-TGCCACCCCTGATGACC GEST: gi|211396446|gb|FK983487.1|FK983487
genomic: GCCAACGGCACATCTACTCTTGCTGTGG-AGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCA-CGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211396446|gb|FK983487.1|FK983487
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCA-CGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211396446|gb|FK983487.1|FK983487
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCA-CGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148956890|gb|EC902811.2|EC902811
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148956890|gb|EC902811.2|EC902811
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148956890|gb|EC902811.2|EC902811
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211393820|gb|FK983468.1|FK983468
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211393820|gb|FK983468.1|FK983468
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211393820|gb|FK983468.1|FK983468
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|149047149|gb|EE048155.2|EE048155
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|149047149|gb|EE048155.2|EE048155
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|149047149|gb|EE048155.2|EE048155
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211393819|gb|FK983467.1|FK983467
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCA-CGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211393819|gb|FK983467.1|FK983467
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCA-CGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211393819|gb|FK983467.1|FK983467
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCA-CGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148959103|gb|EE010585.2|EE010585
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148959103|gb|EE010585.2|EE010585
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148959103|gb|EE010585.2|EE010585
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|211396445|gb|FK983486.1|FK983486
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGC-AACGGCACATCTACTCTTGCTGTGGAGC-TGCCACCCCTGATGACC GEST: gi|211396445|gb|FK983486.1|FK983486
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGC-AACGGCACATCTACTCTTGCTGTGGAGC-TGCCACCCCTGATGACC GEST: gi|211396445|gb|FK983486.1|FK983486
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGC-AACGGCACATCTACTCTTGCTGTGGAGC-TGCCACCCCTGATGACC GEST: gi|148957059|gb|EC903023.2|EC903023
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148957059|gb|EC903023.2|EC903023
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|148957059|gb|EC903023.2|EC903023
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|91055356|gb|EB165774.1|EB165774
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|91055356|gb|EB165774.1|EB165774
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC GEST: gi|91055356|gb|EB165774.1|EB165774
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
EST: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACC G
genomic: TGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgta ... ctgtttgtag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGCTGTAGAGGCGCAGCCAGAGGCGGATGCTGTAGTCCTGTCTGTGGCTGCCAACGGCACATCTACTCTTGCTGTGGAGCCTGCCACCCCTGATGACCgtagtgtgtaaagcacagcctgcagttcagtcgtgtttttcatgaggcagatgataacaacactcttctttcactgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG