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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttccaacttttttggtctgtgcttttacaagttaaggacaaggttgtagcatctagtttgcaaaaataatatctgaacctcatttttcgattcta...

Basic information

species Zea mays
transcript GRMZM2G091503_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091503_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 5'ss of exon 2
CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttccaactttt-ttggtctgtgcttttacaagttaaggacaaggttgtagcatctagtttgcaaaaataatatctgaacctcatttttcg-attcta
  || || |||||||| || | | ||||||||||||| ||||||||||| ||||| ||||||||||| | | | | ||||||||||| || |   ||   |   ||  |||   || | | |           ||| |  |||   |  |   | | | |  |     | ||||||       ||
TTTCGTGCCTGAAATCCTCGAAAGCAAACACCATAGTGCTATCTGGGCTCAGTGGTAGTGGCAAAACTATTCTCTTCTACCAGgtaattttctgtttcaatcattcaatgcccatatatggttcctttttatgtgt-gtttctcactc-cttcagtgacagttattttttatttttgatggatta

upper sequence: GRMZM2G091503_T04 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0127g00270.t01 (Vitis vinifera), 5'ss of exon 3
-CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttccaacttttttggtc-tgtgcttttacaagttaaggacaaggttgtagcatctagt-ttgcaaaaataatatctgaacctcatttttcgattcta
    | |||   |   |  | | | | || ||| | || ||  ||||||||||||| ||||||||||| ||| ||| |||||| |||| |   | | |  |||||  ||||  |  |     | || | | |  | |   ||  ||  ||  | | || | || |  |  | |||| |  |||   
TTCGCCTGTTCAAGCGCA-CAAAATCCAATACCGTTGTACTTACTGGGCTTAGTGGAAGTGGCAAAACTACTCTTTTCTACCAAgtaagtgttaccctgattggttatgtgactgaaatgtgtcagaaaatgtatttgctatgaagaattttatatatgacattt--attttatttatatattaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211020826|gb|FL435096.1|FL435096
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC