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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttccaacttttttggtctgtgcttttacaagttaaggacaaggttgtagcatctagtttgcaaaaataatatctgaacctcatttttcgattcta...

Basic information

species Zea mays
transcript GRMZM2G091503_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091503_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 5'ss of exon 2
CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttccaactttt-ttggtctgtgcttttacaagttaaggacaaggttgtagcatctagtttgcaaaaataatatctgaacctcatttttcg-attcta
  || || |||||||| || | | ||||||||||||| ||||||||||| ||||| ||||||||||| | | | | ||||||||||| || |   ||   |   ||  |||   || | | |           ||| |  |||   |  |   | | | |  |     | ||||||       ||
TTTCGTGCCTGAAATCCTCGAAAGCAAACACCATAGTGCTATCTGGGCTCAGTGGTAGTGGCAAAACTATTCTCTTCTACCAGgtaattttctgtttcaatcattcaatgcccatatatggttcctttttatgtgt-gtttctcactc-cttcagtgacagttattttttatttttgatggatta

upper sequence: GRMZM2G091503_T04 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0127g00270.t01 (Vitis vinifera), 5'ss of exon 3
-CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttccaacttttttggtc-tgtgcttttacaagttaaggacaaggttgtagcatctagt-ttgcaaaaataatatctgaacctcatttttcgattcta
    | |||   |   |  | | | | || ||| | || ||  ||||||||||||| ||||||||||| ||| ||| |||||| |||| |   | | |  |||||  ||||  |  |     | || | | |  | |   ||  ||  ||  | | || | || |  |  | |||| |  |||   
TTCGCCTGTTCAAGCGCA-CAAAATCCAATACCGTTGTACTTACTGGGCTTAGTGGAAGTGGCAAAACTACTCTTTTCTACCAAgtaagtgttaccctgattggttatgtgactgaaatgtgtcagaaaatgtatttgctatgaagaattttatatatgacattt--attttatttatatattaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211515522|gb|FL138438.1|FL138438
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTNCA-TGGAAGAAA-
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTT-CAATGGAAGAAAA
EST: gi|211020826|gb|FL435096.1|FL435096
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211515518|gb|FL138434.1|FL138434
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGA
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGA
EST: gi|211433350|gb|FL131195.1|FL131195
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|26557413|gb|CA829648.1|CA829648
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|60339827|gb|DN206800.1|DN206800
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|60346742|gb|DN213715.1|DN213715
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211513168|gb|FL138424.1|FL138424
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAB                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211513170|gb|FL138426.1|FL138426
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTKGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|26456106|gb|CA827689.1|CA827689
EST:     TAGTTCCATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211515523|gb|FL138439.1|FL138439
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|21809710|gb|BQ668028.1|BQ668028
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|89106845|gb|DY577062.1|DY577062
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|22935960|gb|BU572235.1|BU572235
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|60344808|gb|DN211781.1|DN211781
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211513175|gb|FL138431.1|FL138431
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211515531|gb|FL138440.1|FL138440
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|22818765|gb|BU498855.1|BU498855
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|26559708|gb|CA831943.1|CA831943
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|22520628|gb|BU079439.1|BU079439
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211513172|gb|FL138428.1|FL138428
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCRAGGAACTGTTACTTCAATGGAAG
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAG
EST: gi|32914426|gb|CF019238.1|CF019238
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|26559949|gb|CA832184.1|CA832184
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
EST: gi|211515519|gb|FL138435.1|FL138435
EST:     TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAG                         CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC
genomic: TAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttcca ... tgcttgtcagCTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAAC