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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcattttttatttatgcttgtttatcag

Basic information

species Zea mays
transcript GRMZM2G090808_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090808_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 8
AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcattt-tttatttatgcttgt-ttatcag----------------------------------------------------------------------------------------------
||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| |||| ||| || |||||||| |||||||| ||||||||||| | || | ||||| |  |  | |||  |                                                                                               
AATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGgtaacttatctatttctaatcctgttactattttcccattttaatcataacaaacaatttgctcttgtgatttttcatattttcgtccatccaatggagctaattgatattccatgggtatgcag

upper sequence: GRMZM2G090808_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 8
AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtc--attttttattta--tgcttgtttatcag-------------------------------------------------------------------
 |||||||| || ||||| ||||||| |   ||  | ||||  |||||| |||||||||||||||  || |||||||| ||||||||||| |||||||||||   ||   ||||| |  |   |||||  ||                                                                    
GATGTTTGTGGTAGGAGTAAATGAGACTTCATACAAGCCAAGCATGAATATTGTTTCTAATGCAAGCTGTACCACCAATTGCCTTGCTCCTCTTGCCAAGgtttgatagcttattgaactttctgttttgcaaatgattggctacagtaattttttatgatgagaaatggttagctaatgcctgacttcatttatctatt

upper sequence: GRMZM2G090808_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S57_242V6.1 (Physcomitrella patens), 5'ss of exon 7
AATGTTTGTAGTTGGAGTTAATGAGAATAGCTATGATCCAAAGATGAATGTTGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgt------cattttttattt---atgcttgtttatcag---------------------------------------------------------------
|||||| ||  | || || |||||||||   ||        | |||||  ||||||||||||| |  |||||||||||||| ||||| ||||||||||||||      | |  ||  | |   || ||| | |                                                                    
AATGTTCGTCATGGGTGTAAATGAGAATTCGTACACGGATGACATGAACATTGTTTCTAATGCTAGCTGCACCACCAACTGTCTTGCCCCACTTGCCAAGgtgaaccacgtgcttcgtcttcaatacttttctcctttcttcaagaatattacattggttaaccgaaaacagaggctaaattttcatggtattttaaccag