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GGGCAGCTGGACAGCATCTGCTAACTGGAACTGGATAGTCGATCCCCTGAACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttagggataaattctcttatattacccatttattcttgaaaaagttgaaaacataatccaactacatttaacattttcaacttttcccaacctt...
species | Zea mays |
transcript | GRMZM2G090087_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGTGATAAATTCATCAAAGGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211082384|gb|FL402151.1|FL402151
genomic: CGGTGATAAATTCATCAAAG-TTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: CGGTGATAAATTCATCAAAGTTGCTTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|67040057|gb|CO466312.1|CO466312
genomic: CGGTGATAAATTCATCAAAGTTGCT-GAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTGGAGCGAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|148958687|gb|EC904955.2|EC904955
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211219293|gb|FL379956.1|FL379956
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGEST: gi|94472231|gb|EB701189.1|EB701189
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGG
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211484357|gb|FL369749.1|FL369749
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211535838|gb|FL377068.1|FL377068
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTYATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211390609|gb|FL418018.1|FL418018
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211059652|gb|FL374524.1|FL374524
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|60399068|gb|DN231882.1|DN231882
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|60346857|gb|DN213830.1|DN213830
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|28576035|gb|CB281927.1|CB281927
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211261878|gb|FL409707.1|FL409707
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACEST: gi|149071327|gb|EE159720.2|EE159720
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCAC
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211254108|gb|FL390493.1|FL390493
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCEST: gi|211069274|gb|FL419947.1|FL419947
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCC
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGEST: gi|60339011|gb|DN205984.1|DN205984
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGG
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211309737|gb|FL424540.1|FL424540
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211337034|gb|FL418406.1|FL418406
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: CGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCAEST: gi|211524408|gb|FL405472.1|FL405472
genomic: CGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGG-AACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCAGCTGGACAGCATCTGCTAACTGGAACTGGATAGTCGATCCCCTGAACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttagggataaattctcttatattacccatttattcttgaaaaagttgaaaacataatccaactacatttaacattttcaacttttcccaacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacata