Sequence
atgc intronic sequence ATGC exonic sequenceTGTAGGTGTTGCTGTATGCACAGTCACTGATGTTAGTGTGAACTCTCAAGGGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtattattgatgttgagacttggtactttgttgttcatatatctgtatatgacatcttttcctatttggagctatccttctttagcacctatttta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 4
TGTAGGTGTTGCTGTATGCACAGTCACTGATGTTAGTGTGAACTCTCAAGGGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatt--attg---atgttgagacttggtactt-tgttgttcatatat-ctgtatatgacatcttttcctatttggagctatccttctttagcacctatttta
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AGTAGGAGTTGCTGTATGTACTGTGACTGATGTTAGTGTGAATTCAAAAGGGCTGCTAGCAGCTGTAATTGCAGTTTGGAGCACAGCACTACAGCAGCATgtgagtatttgattgtgcacattttgacgtattccatgccctagtgataactgctctgtttggctcctttttaaat----accttggcttctgaatgagcagtt---
upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 4
TGTAGGTGTTGCTGTATGCACAGTCACTGATGTTAGTGTGAACTCTCAAGGGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtattattgatgttgagacttggtactttgttgttcatatatctgtatatgacatcttttcctatttggagctatcctt--ctttagcacctatttta
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AGTAGGTGTTGCCGTGTGTACTGTGACTGATGTTAGTGTGAATTCACAAGGGCTCATAGCTGCCATAATAGCGGTTTGGAGCACTGCACTACAACAGCATgtgagtattgccactcctaga--ttgtgcctttgttgtccccattcctacatactgagaattctcctgtattaactaagtctctactttgatacttttgctcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8382969|gb|BE056017.1|BE056017EST: GGTTACTAGCTGCAGCAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTATTCGCTTGGCTCATTCAATCTCTTA
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAGGTGTTGCTGTATGCACAGTCACTGATGTTAGTGTGAACTCTCAAGGGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtattattgatgttgagacttggtactttgttgttcatatatctgtatatgacatcttttcctatttggagctatccttctttagcacctatttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA