1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAACGGCGCTTGATGGAGAAAATACCAGAGATTGTTGCAGTTGAGCCCATTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttctattgttggccaaatattctattggtaaaagtcacttgattcttatggattactgaagtaaaccaggacttattttgttggattttgatt...
species | Zea mays |
transcript | GRMZM2G089317_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|26560055|gb|CA832290.1|CA832290
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|211314413|gb|FL115082.1|FL115082
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCA-GAGAACATTGAAAAG GTACTTGACGAGATEST: gi|78092999|gb|DV521373.1|DV521373
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGAT
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|23199609|gb|BU582174.1|BU582174
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|108824268|gb|EC278276.1|EC278276
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTAGCACAGGAGGTGGCGAGCTCEST: gi|13557691|gb|BG549047.1|BG549047
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|6563742|gb|AW231274.1|AW231274
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|211258469|gb|FL134883.1|FL134883
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|29543551|gb|CB603933.1|CB603933
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|76290648|gb|DV030216.1|DV030216
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|18180714|gb|BM381924.1|BM381924
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGCCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|67017852|gb|CO446601.1|CO446601
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|45568454|gb|CK986072.1|CK986072
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|211222822|gb|FL455724.1|FL455724
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|60340325|gb|DN207298.1|DN207298
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|37377314|gb|CF625250.1|CF625250
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|71433911|gb|DR814961.1|DR814961
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|76290647|gb|DV030215.1|DV030215
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|148954266|gb|EC899670.2|EC899670
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|12973012|gb|BG268268.1|BG268268
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|148950763|gb|EC896363.2|EC896363
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|50324425|gb|CO519551.1|CO519551
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|149103365|gb|EE288750.2|EE288750
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|18178397|gb|BM379607.1|BM379607
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTCEST: gi|148943916|gb|EC888996.2|EC888996
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
EST: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAG GTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
genomic: TTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttc ... cctgtatcagGTACTTGACGAGATTAGGCCATACCTTGCTGGCACAGGAGGTGGCGAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACGGCGCTTGATGGAGAAAATACCAGAGATTGTTGCAGTTGAGCCCATTGCTGATGAGGAAACTGGCCTTGAGTTGAACCAAGAGAACATTGAAAAGgtaaatgttctattgttggccaaatattctattggtaaaagtcacttgattcttatggattactgaagtaaaccaggacttattttgttggattttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagtaaa