Sequence
atgc intronic sequence ATGC exonic sequenceAGTTAACTCCGGGGCCTAGTGTATACAGATATTTGATTCATGGGGTGGACAACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttccttacttttcttgctttcatgtattaccaacttcatgattggcggtgctgctatgtatctgcactgtcttatagaacaacattgatggctcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G088533_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g43390.1 (Oryza sativa), 5'ss of exon 3
AGTTAACTCCGGGGCCTAGTGTATACAGATATTTGATTCATGGGGTGGACAACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct--tacttttcttgctttcatgtattaccaacttcatgattggcggtgctgctatgtatctgcactgtcttatagaacaacattgatggctcc--
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AGTAAACTCTGGGGCTCAATGTATACAAATATTTGATTCATGGGGTGGACAACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAGCAGgtagcttacttttacttttctcggtcctgtttgcttccttaatccttatgactaatttcatgatgggtg---gctgctcta-aggttaatcaggttggatctac
upper sequence: GRMZM2G088533_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G34500.1 (Glycine max), 5'ss of exon 4
AGTTAACTCCGGGGCCTAGTGTATACAGATATTTGATTCATGGGGTGGACAACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcctta-----cttttcttgctttcatgtattaccaacttcatgattggcggtgctgctatgta-tctgcactgtcttatagaacaacattgatggctcc
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AGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAATGCTGGTCAAAGTCATATATCAAAGAGgtaacagaaaaaaaaaatcctcatttctttcttgcctgatgaaattgtattttaatttttaaactttgcaatttggaattcttattattaagcctttgct------
upper sequence: GRMZM2G088533_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G35880.2 (Glycine max), 5'ss of exon 4
AGTTAACTCCGGGGCCTAGTGTATACAGATATTTGATTCATGGGGTGGACAACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttccttacttttcttgcttt-catgtattaccaacttcatgattggcggtgctgctatgtatctgcactgtcttatagaacaa-cattgatggctcc
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AGTGGAGTCTGGGGCTCATTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGAAATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGgtaacagaaaaaaaaatctccatttgcctgatgaaattgttttttaattttttaaacttcgcaatttggaattcttgttattaagccttcacttatgtta--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32838178|gb|CD977856.1|CD977856EST: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAG ATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGT
genomic: AACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttcct ... tcttcgacagATTGTGAATAGGATTAAGAAAGAGTGCCCTCATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTAACTCCGGGGCCTAGTGTATACAGATATTTGATTCATGGGGTGGACAACTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAAAAGgtgacttccttacttttcttgctttcatgtattaccaacttcatgattggcggtgctgctatgtatctgcactgtcttatagaacaacattgatggctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG