1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTCATTCCTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactgtgcattcattttttatacataaacattcgatctgcgatttgatgaactacttgggaacctcacgtctttgttcataactgcag
species | Zea mays |
transcript | GRMZM2G086805_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGTCTCGGAGGAGCTTCCAGAAGAGTATCTAA GGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAEST: gi|26557679|gb|CA829914.1|CA829914
genomic: CTGTCTCGGAGGAGCTTCCAGAAGAGTATC-AAgtaaaaactg ... ataactgcagGGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTA
EST: CTGGG-GCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA GGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAAEST: gi|29129751|gb|CB380455.1|CB380455
genomic: CTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactg ... ataactgcagGGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAA
EST: CTGGG-GCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA GGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAAEST: gi|28986940|gb|CB351384.1|CB351384
genomic: CTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactg ... ataactgcagGGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAA
EST: CTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA GGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAAEST: gi|166410134|gb|EG136554.1|EG136554
genomic: CTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactg ... ataactgcagGGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAA
EST: TACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA GGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAAEST: gi|30087685|gb|CB885891.1|CB885891
genomic: TACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactg ... ataactgcagGGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAA
EST: CTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAA GGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAAEST: gi|32930934|gb|CF035746.1|CF035746
genomic: CTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactg ... ataactgcagGGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAA
EST: CTGGGTGCTATACACTTGCTGTCTCGGAGGGGCTTCCAGAAGAGTATCAA GGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAA
genomic: CTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactg ... ataactgcagGGGATTTGTCAAGACAACAACGTGCAGTATGTGCCGCCCAAGCGTGTCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATTCCTGGGTGCTATACACTTGCTGTCTCGGAGGAGCTTCCAGAAGAGTATCAAgtaaaaactgtgcattcattttttatacataaacattcgatctgcgatttgatgaactacttgggaacctcacgtctttgttcataactgcag
- - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - GAGCTT