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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTAGCTGCCGAGAAGCTAAAGAACATGGGTCCAGTAACAAAAAATGAATGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttttctttttaaagagaattttccccatgaattgacttgcaatctgtaactaaacttttggtaactgaacttttgtatttaatttcaccgttc...

Basic information

species Zea mays
transcript GRMZM2G086258_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086258_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g37600.1 (Oryza sativa), 5'ss of exon 2
CATTAGCTGCCGAGAAGCTAAAGAACATGGGTCCAGTAACAAAAAATGAATGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagact----tttctttttaa-agagaattttccccatgaattgacttgcaatctgtaactaaacttttggtaactgaac-ttttgtatttaatttcaccgttc
|| |||||||  | || || ||||||||||| |||||||||| |||||||||| ||||| |||  || ||| ||||||| || ||||| ||||||||||||||||| |    | ||||||||  |    |||||  |||||| || | |||| || | ||  |     | || | |    || |||  | ||  ||||        
CAATAGCTGCACAAAAACTGAAGAACATGGGACCAGTAACAAGAAATGAATGGATCATGGTTGCTACAATGATTCTTGCTGTTTCACTGTGGATTTTTGGgtaagattgatctctctttttactaatttattttttccatgagttaatttgccatatatactttggtctatgattatgccacatttcctgttgcattttt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156789|gb|DY401578.1|DY401578
EST:     ATGCTTCTTGCAGTCTCACTATGGATTTTTGG                         GGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
genomic: ATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttt ... aatatggcagGGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
EST: gi|76927079|gb|DV171139.1|DV171139
EST:     GGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGG                         GGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
genomic: GGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttt ... aatatggcagGGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT