1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattctgacagaacttgtctaatacctggagcaatcatctgtagcatgccaatgacacaaaactatgattatttgtagctatcacttgcagccat...
species | Zea mays |
transcript | GRMZM2G085670_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGWGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAEST: gi|211512613|gb|FL228206.1|FL228206
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAEST: gi|211512616|gb|FL228209.1|FL228209
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACYCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAEST: gi|211512608|gb|FL228201.1|FL228201
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAEST: gi|211512617|gb|FL228210.1|FL228210
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTEST: gi|211281965|gb|FL132366.1|FL132366
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTT
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGEST: gi|211512610|gb|FL228203.1|FL228203
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACG
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAEST: gi|211514961|gb|FL228214.1|FL228214
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAEST: gi|211512615|gb|FL228208.1|FL228208
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAEST: gi|76294401|gb|DV033969.1|DV033969
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
EST: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAG ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
genomic: TCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattc ... ttttcttcagATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAAGCAACTCAGTGTGCTAACTCTGGCAGAGTCAACTAAGgtacgaattctgacagaacttgtctaatacctggagcaatcatctgtagcatgccaatgacacaaaactatgattatttgtagctatcacttgcagccat
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA