Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgaggaaacgccag

Basic information

species Zea mays
transcript GRMZM2G085600_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 5'ss of exon 1
--TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgaggaaacgccag
  ||||||||| ||||| ||||||||||||||||| ||||| ||||| || ||||| || ||| | |||||||||||||| ||||||||||||||||||||||||||||   | | || || ||  || | | |    | ||     | |    || | |||    |||||||||| |   ||  |||||
AGTGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcc-tcattgtaactt-catgtttctgtaac-tccatgatccataattttaacaca--gcataatatt-ggtcaattgccag

upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 3
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgaggaaacgccag
||||||||| ||||| ||||||||||||||||| ||||| ||||| || ||||| || ||| | |||||||||||||| ||||||||||||||||||||||||||||   | | || || ||  || | | |    | ||     | |    || | |||    |||||||||| |   ||  |||||
TGATGGAGGTTACTTTAATGCAATAATGAGCTTTCCACAGAATTATCCTAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttcc-tcattgtaactt-catgtttctgtaac-tccatgatccataattttaacaca--gcataatatt-ggtcaattgccag

upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G04470.2 (Glycine max), 5'ss of exon 3
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgc-ataatatttgaggaaacgccag
||| || || |  |||||||| || |||||||| ||||  || |||||||| || ||||||||||| | ||||||||| ||  | |||||||| ||||||  |  |||   |  |     || ||||| | |  | | |     | |   |  |     || ||||  |   |||||  |         
TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttgg--tttggctcat-----ttttatttttatcttgctttgattgatacatgataatgaatgatgctgttccatttgcag---------

upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv13s0019g00910.t01 (Vitis vinifera), 5'ss of exon 3
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgagg-aaacgccag
|||||| || | ||| |||||  | ||||  || ||||   | |||||||||||||| ||| | || || || |||||||| || ||||||||||||||| || |      |||||    || |       || || ||      || ||| |   |  |   ||| |||  ||   |  ||||  |||
TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagtta-----tagtgttctttattagagcatattttatgc----ttttgtgtaagggaaaagtgcttaaagttgctgtcaaactacag

upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 5'ss of exon 3
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctg----ttttctgacatcatgcataatatttgaggaaacgccag
 ||||| || |  |||||||| || ||||| || ||||  ||||| || ||||| || |||||||| || |||||||| || ||||||||||| |||||| | ||| ||||   |   |  |  || ||| ||  | |  | |   |  |     | |||||    |    ||     |    ||||  |||
CGATGGGGGCTTTTTCAATGCTATTATGAGTTTTCCACCCAATTATCCCAACAGTCCTCCATCAGTGAGGTTTACCTCGGATATGTGGCATCCTAATGgttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211533490|gb|FK952750.1|FK952750
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211533484|gb|FK952744.1|FK952744
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211533493|gb|FK952753.1|FK952753
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211530484|gb|FK952736.1|FK952736
EST:     AAACAGCCCGNCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGG
EST: gi|211313830|gb|FL083564.1|FL083564
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCAGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211533486|gb|FK952746.1|FK952746
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGT
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGT
EST: gi|211315846|gb|FL083573.1|FL083573
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCAGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211530487|gb|FK952739.1|FK952739
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|74240335|gb|DT648249.1|DT648249
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211530485|gb|FK952737.1|FK952737
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: gi|211533485|gb|FK952745.1|FK952745
EST:     AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG                         TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG