1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACAGTTATATAAGATACATGTCTATTGCAGGTGGATCCAAACACTGGGGTCGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattcaacgtatcttctttttgtttctgctcttaaaggttgttccttttagtcacctttgtttgtgctttgtttttcag
species | Zea mays |
transcript | GRMZM2G085000_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATG GTGAGGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAEST: gi|87151648|gb|DY396437.1|DY396437
genomic: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattc ... tgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACA
EST: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATG GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGEST: gi|18964160|gb|BM660845.1|BM660845
genomic: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattc ... tgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAG
EST: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATG GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGEST: gi|148937629|gb|EC881822.2|EC881822
genomic: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattc ... tgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAG
EST: GAATCAGATGACATCATAAAATACCTAGCTGACACATATG GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAEST: gi|60352714|gb|DN219687.1|DN219687
genomic: GAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattc ... tgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACA
EST: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATG GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACA
genomic: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattc ... tgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGTTATATAAGATACATGTCTATTGCAGGTGGATCCAAACACTGGGGTCGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattcaacgtatcttctttttgtttctgctcttaaaggttgttccttttagtcacctttgtttgtgctttgtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA