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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAAGCAGTCCAAAATTTAAGGTCTTGCTTTTTCTAGTGACAGTCCTGGCAACATCCATGGTGATTGGTGATGGTGTACTAACTCCATCTATGTCAGgtgagttcagtctccttcctcatctcttgtaaaaaatgttgtatacagggtatagttaaaatacacatggattattaaaataaataaggcagtgtatcac...

Basic information

species Zea mays
transcript GRMZM2G084779_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G084779_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g70490.1 (Oryza sativa), 5'ss of exon 3
ATGGAAAGCAGTCCAAAATTTAAGGTCTTGCTTTTTCTAGTGACAGTCCTGGCAACATCCATGGTGATTGGTGATGGTGTACTAACTCCATCTATGTCAGgtgagttcagtctccttc------ctcatctcttgtaa---------------aaaatgttgtatacagggtatagttaaaatacacatggattattaaaataaataaggcagtgtatcac----------------------------------------------------------------------
||||||| ||||||||| |||||| || | ||||| ||||| ||| | ||||||||||| |||||||||||||| || ||||||||||||| ||| |||||||||||   | ||  |       |||||  ||  | |                 || |||| ||  | || ||  || ||  | |||||| |||||||||  |  |   |    |                                                                           
ATGGAAAACAGTCCAAATTTTAAGATCATACTTTTCCTAGTAACAATTCTGGCAACATCTATGGTGATTGGTGACGGCGTACTAACTCCATGTATTTCAGgtgagttttctttcactttctggactcattgctgatgattaaatggctataatgtaaagttgcatggaagggatgattgaagcagacatgggttattaaaaacacgatatctcccttctgaactgcatgaacacatgctgaagtgtttcaaagtaactcatgcattttttttctttttggtaatattatag