1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTTGTCGTCCGTAATGATGAAGTGGTTGTTAGCTGCCATAACATGGTTCTGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacctgaaggctaccattagcagtcttacttagtaaaattatcattactttaatctctttttgcaatctgtctagcagttaatttcattatttgatatgtgcttgatggtctctgtatgcccatattttag
species | Zea mays |
transcript | GRMZM2G082924_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGEST: gi|31628205|gb|CD526493.1|CD526493
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGEST: gi|24462578|gb|BM660109.1|BM660109
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGEST: gi|15632335|gb|BI679428.1|BI679428
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGEST: gi|60345427|gb|DN212400.1|DN212400
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGEST: gi|44681911|gb|CK786959.1|CK786959
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGTCGTCCGTAATGATGAAGTGGTTGTTAGCTGCCATAACATGGTTCTGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacctgaaggctaccattagcagtcttacttagtaaaattatcattactttaatctctttttgcaatctgtctagcagttaatttcattatttgatatgtgcttgatggtctctgtatgcccatattttag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG