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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGTTCTCCATTCAAGCAGCTGACCACCGAGAACCTGAGGTTCCTGTCGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAGgtttaattaattaattggcattgtgttgcctgattcagcaactcgtgcttcatgtgctggaagaatcgtgagcctttctctgtttttcctttttcttttcccggtag

Basic information

species Zea mays
transcript GRMZM2G082502_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082502_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g36780.1 (Oryza sativa), 5'ss of exon 3
GAAGAGTTCTCCATTCAAGCAGCTGACCACCGAGAACCTGAGGTTCCTGTCGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAGgttta-------attaattaattg-gcattgtgttgcctgattca---gcaactcgtgcttcatgtgctggaagaatcgtgagcctttctctgtttttccttt---------ttcttttcccggtag--------------------------------------------------------
 ||||| || || ||| ||   || ||||| ||||||||||||||||||||||| |||||||| ||||||||||||| || |||||| ||| | || |||||          ||  |  || ||         |  ||  ||||    | || |||  ||   | || |  ||     ||||   || | |||  ||||   |          | |||  |  ||                                                          
CAAGAGCTCCCCGTTCGAGAGCCTCACCACGGAGAACCTGAGGTTCCTGTCGTCCAAGCAGGCACTGTTCGACCTGGTCGCCTTCCGCCAGCATTACCAGgtcaggattcagatcgacgaaatgcatgaaaaatctccctattcccgtgtaaatcgaactgtttatggtcaaattcatgtgaaa-ttcccctgcgtttcaaatggggataaactatttagcacgtgattttctgatctctctctctctctctctctctctgtgtggttttgttgcttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18659380|gb|BM500307.1|BM500307
EST:     CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAG                         GAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC
genomic: CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAGgtttaattaa ... ttcccggtagGAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC
EST: gi|74233811|gb|DT641725.1|DT641725
EST:     CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAG                         GAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC
genomic: CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAGgtttaattaa ... ttcccggtagGAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC