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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTACTTCCAGAACATATCGGTGCCTGCCACATGCGCATAACCTTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaattggcatcagctaaagtcttgcggcttcctgttgataatgcttaaaattattatccttttaagtgctatgctatttattaaccatctaacccttgtgaattgtgatcctatttttgttcatttaacag

Basic information

species Zea mays
transcript GRMZM2G082174_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082174_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g33830.2 (Oryza sativa), 5'ss of exon 5
ATATTTACTTCCAGAACATATCGGTGCCTGCCACATGCGCATAACCTTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtacta---gaaattggcatcagctaaagtc--ttgcggcttcctgttgataatgcttaaaattattatccttttaagtgctatgctatttattaaccatctaacccttgtgaattgtgatcctatttttgttcatttaacag
|||||||||||| |||||| ||    |||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||      |||  ||||      |||| |   ||    | |||  | |   |||||| |    |  || ||   |    |    |||  | ||      |                                          
ATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAGgtaaagagggaagctggcgatgtttaaatttgattttaacctccattagcatatgcttgatgagacaatactcaaattcacatcactaactgtttggttacag----------------------------------------

upper sequence: GRMZM2G082174_T05 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G37080.1 (Glycine max), 5'ss of exon 6
ATATTTACTTCCAGAACATATCGGTGCCTGCCACATGCGCATAACCTTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaattggcatcagctaaagtcttgcggcttcctgttgataatgcttaaaattattatccttttaagtgct-atgctatttattaaccatctaacccttgtgaattgtgatcctatttttgttcatttaacag
|||  | |||||||  ||| | ||| | ||  || |||| ||  | | ||| || ||||| ||| |||||||||||||||||||  ||||||||||||| | ||   | | |    | |   || |      | |    |||     |||  |||  |||    |||    || |  | | || | ||   | |     ||                                  
ATACCTGCTTCCAGCCCATGTTGGTTCTTGTAACTTGCGAATTTCATATTCCGCACATAAAGATCTGAATATCAAATTTCAGTCAAATCGCAGCAGgtaat-gatggtagtaaagacaactatcatatattattcgtcagat----tttatcattggtatttccttagaaactcaaacaaattgtgaaagctattgtattt----------------------------------

upper sequence: GRMZM2G082174_T05 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G49580.1 (Glycine max), 5'ss of exon 5
ATATTTACTTCCAGAACATATCGGTGCCTGCCACATGCGCATAACCTTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaattggcatcagctaaagtcttgcggcttcctgttgataatgcttaaaattattatccttttaagtgct-atgctatttattaaccatctaacccttgtgaattgtgatcctatttttgttcatttaacag
 ||  | |||||||  ||| | ||| | ||  || |||| ||  | | ||| || ||||| ||| |||||||||||||||||||  ||||||||||||| | ||   | | |    | |   || |      | ||   |||     |||  |||  | |    |||    || |  | | || | ||      | |  ||||   ||                           
-TACCTGCTTCCAGCCCATGTTGGTTCTTGTAACTTGCGAATTTCATATTCCGCACATAAAGATCTGAATATCAAATTTCAGTCAAATCGCAGCAGGtaat-gatggtagtaaagacaagtatcatatattattcttcagat----tttatcattggtttttccttagaaactcaaacaaattgtgaa------agctattgtatttt---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60401250|gb|DN234057.1|DN234057
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|76922866|gb|DV169212.1|DV169212
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|74240234|gb|DT648148.1|DT648148
EST:     TCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|148949666|gb|EC895139.2|EC895139
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|148967274|gb|EE018478.2|EE018478
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|148942887|gb|EC887930.2|EC887930
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCCATCCTTACCTTCCTGTGAACCCAACAGCATTTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|149098038|gb|EE183986.2|EE183986
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|148944648|gb|EC889782.2|EC889782
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
EST: gi|148982096|gb|EE028144.2|EE028144
EST:     TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG                         GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT
genomic: TTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtactagaaa ... catttaacagGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGAT