1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATGGCAATGAAGGGCTGCAAGCTGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTGTAATGCTCACTCCACTGATTCAGTCTgtaagttttcacttccattgctatgaccatgctcatccttttgaccctgccttctgctttatttctggacgaactatag
species | Zea mays |
transcript | GRMZM2G081943_T07 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGATGCAGAAGTGCTTGCTTGTAATGCTCACTCCCACTGATTCAGTCT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|76923406|gb|DV169471.1|DV169471
genomic: GCTGATGCAGAAGTGCTTGCTTGTAATGCTCACT-CCACTGATTCAGTCTgtaagttttc ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: GCTGATGCAGAAGTGCTTGCTTGTAATGCTCACTCCCACTGATTCAGTCT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|60394034|gb|DN226904.1|DN226904
genomic: GCTGATGCAGAAGTGCTTGCTTGTAATGCTCACTCC-ACTGATTCAGTCTgtaagttttc ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: AGCTGATGCAGAAGTGCTTGCTTGTAATGCTCACTCCACTGATTCAGTCT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
genomic: AGCTGATGCAGAAGTGCTTGCTTGTAATGCTCACTCCACTGATTCAGTCTgtaagttttc ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGCAATGAAGGGCTGCAAGCTGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTGTAATGCTCACTCCACTGATTCAGTCTgtaagttttcacttccattgctatgaccatgctcatccttttgaccctgccttctgctttatttctggacgaactatag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT