1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCGAACAAGGAGAAGGAGGAGGACTTCATGGCAATGAAGGGCTGCAAGCTGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcactccactgattcagtctgtaagttttcacttccattgctatgaccatgctcatccttttgaccctgccttctgctttatttctggacgaactatag
species | Zea mays |
transcript | GRMZM2G081943_T06 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|76927528|gb|DV171282.1|DV171282
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|16916366|gb|BM072815.1|BM072815
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|78024330|gb|DV492717.1|DV492717
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|93013674|gb|EB639194.1|EB639194
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|6022366|gb|AW067294.1|AW067294
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: CAGAGGCCAAAGAAGCGGCCCAAGCTGATNGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|78119290|gb|DV537674.1|DV537674
genomic: CAGAGGCCAAAGAAGCGGCCCAAGCTGAT-GCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|33467985|gb|CF245034.1|CF245034
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: AGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|71760896|gb|DR958833.1|DR958833
genomic: AGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|211118733|gb|FL431812.1|FL431812
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|71441686|gb|DR822736.1|DR822736
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCCAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAAEST: gi|149079930|gb|EE168941.2|EE168941
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
EST: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTT ATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
genomic: TGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctca ... cgaactatagATGGTGAGCCCAGGAGCTTGGTTATCAGATTTGTCGCATGAGAGATATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGAACAAGGAGAAGGAGGAGGACTTCATGGCAATGAAGGGCTGCAAGCTGCCACAGAGGCCAAAGAAGCGGCCCAAGCTGATGCAGAAGTGCTTGCTTgtaatgctcactccactgattcagtctgtaagttttcacttccattgctatgaccatgctcatccttttgaccctgccttctgctttatttctggacgaactatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT