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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatccctttttccctctaattttatttgtattcatccaaacataaggtttattgggtgatctagcactgatttcttattcggcgccaataacatg...

Basic information

species Zea mays
transcript GRMZM2G081848_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g07310.3 (Oryza sativa), 5'ss of exon 3
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatccctttttccctctaattttatttgtattcatccaaacataaggtt-tattgggtgatctagcactgatttcttattcggcgccaataacatg-
||| ||||||||||| ||||||||||| || |||||||||||||| || ||||| ||||| ||||||||| | ||||||||||||||||||||||| ||||||  |||   |||| | || |    | ||    | | | |     || |  |  || ||    |  ||       | |  |  | ||  ||  |       
TTTTGATGCAAGGACTGTCATGGGATTTGGTGTGCTCAATGGCATTTCAATTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattgtttttgctctgt--cctgatcaaaacttaacaggctatcatctggtagtgttgtacttaatgtccttctaattgttggtacccctgctgcta

upper sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G39920.4 (Glycine max), 5'ss of exon 3
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatccctttttccctctaattttatt-tgtattcatccaaacataaggtttattgggtgatctagcactgatttcttattcggcgccaataacatg
||| ||    |   | || |||||||||||  |  | ||||| || || ||||||||| |||| |||||  |||| |||||||||||||| |||||||| |||    |    || |   |||  |||| |   || |||||   |  ||   ||| | |  | |       |     ||| | ||| |             
TTTTGAGCAGAAAGCTGTAATGGGATTCGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGGTTCAATTCTGTTGGCTTCTATCAAgtatgtttg---ttatggttctgtttttgtcacgtgttcatttgattat--tgttgactctgagcatctctatgatattccttttcag-------------

upper sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 3
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatccctttttccctctaattttatttgtattcatccaaacataaggtttattgggtgatctagcactgat-ttcttattcggcgccaataacatg
||| ||    |   | || || ||||| ||  |  | ||||| || || ||||||||| |||| |||||  ||||||||||||||||||| |||||||| |||    |    |  | |   |  |||     || |||||   |  ||   ||| | |  |  |  |  |  |||| ||| | ||| |             
TTTTGAGCAGAAAGCTGTAATTGGATTTGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttattatggttctgtt--tttctcacgtgttcatttgattat--tgttgactctg-aacatctctatgatattccttttcag-------------

upper sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
lower sequence: Vv06s0004g07960.t01 (Vitis vinifera), 5'ss of exon 4
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatccctttttccctctaattttatttgta---ttcatccaaacataaggtttattgggtgatctagcactgatttcttattcggcgccaataacatg
||| || || ||  | || |||||||| ||  | || ||||| | ||| ||||| ||| | ||  | || |||||||||||||||||||||||||| ||||||||  |   |  | | ||   ||||  |||  |   |   |    || |||  ||| |    |      | | || |||  || |    |    |  |   
TTTTGACGCTAGAGCTGTGATGGGATTTGGCATACTAAATGGAACATCCATTGGGCTTTTGAATCTTAGCTTGGGTTTCAATTCTGTTGGTTTCTACCAGgtacatttttatcgtcctctggcatttggttttaaaattatgttttcacctaacttttttgcattagaagtgaaatggttttgtaatgtaggtgtttttc---

upper sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacac---atcccttt---ttccctctaattttatttgtattcatccaaacataaggtttattgggtgatct----agcactgatttcttattcggcgcca-ataacatg----------
 || |||||||   | || ||||| || ||  | || ||||| || || |||||||| || ||  ||||  | |||||||||||||||||||||||||||||| |    || | | |   |   | ||| | |||  |||     |           |    ||  ||| |         | || ||||| |      |  | ||    ||          
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag

upper sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
lower sequence: PP1S311_78V6.1 (Physcomitrella patens), 5'ss of exon 2
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtac-acatccctttttccctctaa----ttttatttgtattcatccaaacataaggtttattgggtgatctagc--actgatttcttattcggcgccaataacatg-----------------------------------------------------------------------
 ||||||  | ||||  |  | || || |  || || || || || |||||||| ||||||||| ||||  |||||||||| ||||||||||| |||||||||| | ||    |   |  |  |      |    |||  |   | |     ||  | | |   |  | | | ||  | |    | | || |  |  |  | | | |                                                                       
CTTCGATTTACGGACGCTTTTCGGGTTTGCCGTTCTGAACGGAATTTCTATTGGCCTTCTAAACCTGAGCCTGGGTTTCAACTCTGTTGGTTTTTATCAGgtactaaattttgtcagctatacagaaagctgagcttgcgtgt-tgcgtgattatagatcaagagacgttttggcttattaccatttgatcccccttctgttataagggttctagctctgttgcatgaacaagaaccgaatctgagagagtacgagtaaccaaacaattttcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101387228|gb|EB815631.1|EB815631
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGG
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGG
EST: gi|89251400|gb|DY623186.1|DY623186
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|148991600|gb|EE033131.2|EE033131
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCCGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAG
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAG
EST: gi|148967838|gb|EE019130.2|EE019130
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|148960883|gb|EE011564.2|EE011564
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|148932303|gb|EC875882.2|EC875882
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|148997312|gb|EE035807.2|EE035807
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|149012667|gb|EE042641.2|EE042641
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTT
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTT
EST: gi|50322320|gb|CO517446.1|CO517446
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|149110398|gb|EE190395.2|EE190395
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|31358400|gb|CD442757.1|CD442757
EST:     TTGGACTTCTTAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|71328578|gb|DR800947.1|DR800947
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|148936002|gb|EC880058.2|EC880058
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|149102837|gb|EE288179.2|EE288179
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|149105555|gb|EE291088.2|EE291088
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|87152152|gb|DY396941.1|DY396941
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|148995261|gb|EE034502.2|EE034502
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
EST: gi|149097659|gb|EE183556.2|EE183556
EST:     TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAG                         ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC
genomic: TTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatcc ... atatgttcagATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTC