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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGACCATCAAATCATGCCTTGATGAACTTCCAGGCTTTCCACGAACACAGATTGGATTCTTAACCTTTGACAGCACCTTGCATTTTCATAACTTCAAGgcatgttctacatctctcacatctctactaatataaagcataagtttcttcctttgcgtcctccccctcccacaatcgacaaaaaatgctgcatccagga...

Basic information

species Zea mays
transcript GRMZM2G081745_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081745_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g04020.1 (Oryza sativa), 5'ss of exon 5
AAAGACCATCAAATCATGCCTTGATGAACTTCCAGGCTTTCCACGAACACAGATTGGATTCTTAACCTTTGACAGCACCTTGCATTTTCATAACTTCAAGgcatgttc-tacatctctc---acatctctactaatataaagcataagtttcttcctttgcgtcc--tccccctcccacaatcgacaaaaaatgctgcatccagga-------
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||| || | | |  |||  |     ||| |   ||   ||||   |  ||  |||    ||  || |  |     |      |   |||  |  ||    |||  |         
AAAGACCATCAAATCATGCCTTGATGACCTCCCAGGGTTTCCACGAACACAGATTGGATTCTTAACTTTTGATAGCACATTGCACTTTCATAATTTCAAGgtatatccatctatccttttatccatttgctctgcaataatatactagcgtctgaaatttagttcaatttatgtgaggttacttacatgacttgtattatctggttgtatcag

upper sequence: GRMZM2G081745_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv19s0014g01900.t01 (Vitis vinifera), 5'ss of exon 5
AAAGACCATCAAATCATGCCTTGATGAACTTCCAGGCTTTCCACGAACACAGATTGGATTCTTAACCTTTGACAGCACCTTGCATTTTCATAACTTCAAGgcatgttctacatctctcacatctctactaatataaagcataagtttcttcctttgcgtcctccccctcccaca-atcgacaaaaaatgctgcatccagga--------
| | || || | ||| ||| | ||||| || || || |   |  ||||||||||||| ||| |||| |||||||||||| | |||||| ||||  | |||||| ||  || ||    |  |||     ||| ||  |     |     |   |||||  | ||  |||       |     ||  ||    |  |   |          
ACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGgcaagtcatagatactgc-tatcagctataacatgtatttatatgccatcattttgctgcttcagcctttgggggagttctaagtaacttggggttttgtctgttccag