Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGCCCCGCCGACCTCGACAGCAAATGCGATGGTGGCGCGTCTGATGATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctatcaaaacccagatttttcattcagattgtcatgtcgtggtaacggcctaacgggttgttgtgaaccaaaccattgttcctgctgcag

Basic information

species Zea mays
transcript GRMZM2G081682_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081682_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 5'ss of exon 3
---GACTTGCCCCGCCGACCTCGACAGCAAATGCGATGGTGGCGCGTCTGATGATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtgggg----ctatcaaaacccagatttttcattcagattgtcatgtcgtggt-aacggcctaacgggttgttgtgaacca-aaccattgttcctgctgcag
    || || || ||||||||||| ||||| || | || ||  || || |  |||   ||||| |||||||||||||| ||| |||| || ||||||||||||||| ||    | || ||| |  | |  ||| ||| ||||| |    |   | |        ||     ||||  || || | |||   |||  ||  |  | 
GCAAACCTGTCCGGCCGACCTCGATAGCAAGTGTGGTGATGCTGCTTCAGGGGAT---TGGGAAGGGGAGTTCTTCCCTGGCATCCCCAAGATCAAGTATGAGgtgagggaggccatgaaagcttacagctttgatt-agattattggataaagcttggaaatttatattattgtattggactataactgctgtgactctttga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211316223|gb|FL334911.1|FL334911
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211075605|gb|FL344132.1|FL344132
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211288683|gb|FL312634.1|FL312634
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211328969|gb|FL341564.1|FL341564
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|71426924|gb|DR807974.1|DR807974
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211416745|gb|FL321410.1|FL321410
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|74245361|gb|DT653275.1|DT653275
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|74232804|gb|DT640718.1|DT640718
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211420503|gb|FL364960.1|FL364960
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211457434|gb|FL331063.1|FL331063
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|32866060|gb|CF005742.1|CF005742
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|32909379|gb|CF014191.1|CF014191
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211310239|gb|FL338849.1|FL338849
EST:     TGNATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: TG-ATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211149448|gb|FL325049.1|FL325049
EST:     ATGATTGGGAGGGGGAGTTCTTCCC-GGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACC-TCTTGCTTAT
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTAT
EST: gi|211140891|gb|FL328471.1|FL328471
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
EST: gi|211320715|gb|FL358326.1|FL358326
EST:     ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAG                         GGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA
genomic: ATGATTGGGAGGGGGAGTTCTTCCCCGGCGTCCCGAAAATCAAGTATGAGgtggggctat ... cctgctgcagGGTCCAACAAGCAAGAACCCTCTTGCTTATAAGTGGTATAACAAGGAGGAA