Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGAGAAGAACGAGAACCACACGCTTTGCCTCAATTCTGCCAAAGCGATCGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAGGgtaaagaatctcgcctcatttctctcggattttgatgagttacggcaagagatcatcagagcagagctgtcatgaatgtttgcttcattcctttttatag...

Basic information

species Zea mays
transcript GRMZM2G081380_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081380_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g33080.1 (Oryza sativa), 5'ss of exon 3
TTGGGAGAAGAACGAGAACCACACGCTTTGCCTCAATTCTGCCAAAGCGATCGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAGGgtaaag-------aatctcgcctcatttctctcgg--attttgatgagttacggcaagagatcatcagagcagagctgtcatgaatgtttgcttcattcctttttatag
 ||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||| || ||||||             |||  |   ||||| |     | ||   ||   |       | ||||| || |  ||  |  | | |  | ||| |  || |           
GTGGGAGAAGAACGAGAACCACACCCTCTGCCTCAATTCTGCCAAGGCCATCGGCTGCACTGTCGTGAACATCGGCACGCAGGACCTCGCCGAGGGAAGGgtaggactgcactggactctgcctgtttctttaattcaattccttgtcctcttttgtgtgatcaccacattagtacattaacg--tatttacgacagtatga-------

upper sequence: GRMZM2G081380_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv00s1365g00010.t01 (Vitis vinifera), 5'ss of exon 2
TTGGGAGAAGAACGAGAACCACACGCTTTGCCTCAATTCTGCCAAAGCGATCGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAGGgtaaagaatctcgcctcatttctctcggattttgatgagttacggcaagagatcatcagagcagagctgtcatgaatgtttgcttcattcctttttatag--
|||||||| ||| || || ||||| || |||||||| ||||||||||| || || || ||||| ||||| ||||| ||||| ||| ||   ||||| |||||| |    |  ||||          | ||  |  |   ||  |    ||  |  | | | |     ||   |     |  | || ||    |  |||    
TTGGGAGAGGAATGAAAATCACACCCTCTGCCTCAACTCTGCCAAAGCTATTGGATGTACTGTGGTCAATATCGGGACACAGGACTTCATTGAAGGAAGGgtatatttgcatgcctttccatatatgaatgct--ttgtttgggagttgaatttttgatatcttgaatgatgttttgatgggttttatcgggtaatatgtct

upper sequence: GRMZM2G081380_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S271_37V6.1 (Physcomitrella patens), 5'ss of exon 1
TTGGGAGAAGAACGAGAACCACACGCTTTGCCTCAATTCTGCCAAAGCGATCGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAGGgtaaagaatctcgcctcatttctctcggattttgatg-agttacggcaagaga------tcatcagagcagagctgtcat-gaatgtttgcttcattc--ctttttatag-------------------------------------------
 ||||||   |  ||||| ||||| ||||| ||||||||||| ||||| || || ||| |||| |||||||| ||||| |||||| | | ||| || ||||||| || |   ||   |||| |        | |||| |   |  | | ||        |  |  |     |||||   | | |  |||   |  |    |  |  ||||                                           
GTGGGAGCGAATAGAGAATCACACCCTTTGTCTCAATTCTGCTAAAGCTATTGGTTGCTCTGTTGTCAACATTGGCACTCAAGACTTGGGCGACGGAAGGgtaatgactagtgcacgatttttactaaggatagatgtaacgaatgtacgaagcttgtgttgttggttgttagctgatgttggacattttaatggtgtgaccatccatagttggtgcttgatctcattagtcatgatgtgtgggttggtgcag

upper sequence: GRMZM2G081380_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S314_45V6.1 (Physcomitrella patens), 5'ss of exon 4
TTGGGAGAAGAACGAGAACCACACGCTTTGCCTCAATTCTGCCAAAGCGATCGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAGGgtaaagaatctcgc-ctcatttctctcggat---tttgatgagt-tacggcaagagatcatcagagcagagctgtcatgaatgtttgcttcattcctttttatag----------------------------------------------------------------
 |||||    |  ||||| ||||| |||||||||||||| || ||||| || || ||| |||| |||||||| ||||| || ||| | | ||| || ||||||| ||     || |   ||| | | ||||     | | || | || |  |     |     ||   |  |  | |    ||||   ||| |   ||| |||                                                                  
ATGGGAACGAATAGAGAATCACACACTTTGCCTCAATTCCGCTAAAGCCATTGGATGCTCTGTAGTCAACATTGGCACTCAGGACTTAGGCGACGGAAGGgtaatgacaagtgcacgtctttgtttaggatgaacgtaacgaatatatgaaactttgtatgttgatgtggacaataagacgtgttcttttcgtgaatttgtattagaatgagatggtaaaacacacttcttgcttaattttgtgagtcattttgtgtgggtgaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71313366|gb|DR793232.1|DR793232
EST:     CGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAAGG                         C-TCATCTGGTCCTGGGCTTAATATCTC
genomic: CGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGA-GGgtaaagaatc ... ttgcttgcagCCTCATCTGGTCCTGGGCTTAATATCTC
EST: gi|148970201|gb|EE021132.2|EE021132
EST:     TCGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAGG                         CCTCATCTGGTCCTGGGCTTAATATCTCAAATAATCAAG
genomic: TCGGCTGCACTGTCGTCAACATCGGCACACAAGACCTCGCCGAAGGGAGGgtaaagaatc ... ttgcttgcagCCTCATCTGGTCCTGGGCTTAATATCTCAAATAATCAAG