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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTGTGGAGGCCTCTGCCCGGGATTGAACACGGTCATCCGCGAGCTTGTTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccgaggagtttaatggtgttcgtcctgtgaaaaaacattgtttactagttaatttgaacatgttttttttaaaacaaagaataatccgagatc...

Basic information

species Zea mays
transcript GRMZM2G080375_T06
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 4
CACCTGTGGAGGCCTCTGCCCGGGATTGAACACGGTCATCCGCGAGCTTGTTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccgaggagtttaatggtgttcgtcctgtgaaaaaacattgtttactagttaatttgaacatgttttttttaaaacaaa---gaataatccgagatc
|||||| || ||||||||||| ||| | ||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||  | |  |   ||   | ||    |   |||| ||     || |||  | |  |   | ||||||||||      |    |   | | | |    ||  
CACCTGCGGTGGCCTCTGCCCTGGACTTAACACTGTTATCCGCGAGCTTGTGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAGgtgattaacttgttcttattttgtcacggctttgtgtaacttagttctttgttggg-atgctaaacatgttttgggagtagttgatatgtacattttagga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116813643|gb|EC856113.1|EC856113
EST:     GGCGTCT-CAGCGTCGTCGGCATACAG                         GGTGGATACAA-GG-TTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: GGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|33099629|gb|CF059589.1|CF059589
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAAGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCGAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|87153260|gb|DY398049.1|DY398049
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG