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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggctttctttctctgcggcaaacagtgaattggaggctccatcgtggcggtcttgctcgggtgctgatcctgtggcatgacttgactatctgcag

Basic information

species Zea mays
transcript GRMZM2G080375_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 3
GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggctttctttctctgcggcaaacagtgaattgga----ggctccatcgtggc---ggtcttgctcgggtg--ctgatcctgtggcatgacttgactatctgcag
||| || ||||||||| | ||||||||||||||||| ||||||||||||  | | ||   | | || ||   | || |    || | ||  |||      || |  ||  | |    | ||  |||||  |    ||  |   | |||
GCAATACTTCGTCAACACTGACGACACCGTCACGCAAAAGgtgaggcttcatctttccatgacgaaaagattactgtaattcggttacagggtgatcatagtttgactgagctaacttaattttgtggtgtttgctgcttgctt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234373|gb|DT642287.1|DT642287
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|211522284|gb|FL320492.1|FL320492
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|148940563|gb|EC885365.2|EC885365
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|211143668|gb|FL321938.1|FL321938
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGC-GGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|149076118|gb|EE164702.2|EE164702
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|148941151|gb|EC886025.2|EC886025
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|18661967|gb|BM501673.1|BM501673
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|76914829|gb|DV165709.1|DV165709
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|37416938|gb|CF646120.1|CF646120
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|149087521|gb|EE176918.2|EE176918
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|76290797|gb|DV030365.1|DV030365
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|149111238|gb|EE294735.2|EE294735
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|76913985|gb|DV165359.1|DV165359
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|78078027|gb|DV506442.1|DV506442
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|148935767|gb|EC879810.2|EC879810
EST:     GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
EST: gi|87153260|gb|DY398049.1|DY398049
EST:     GACACCGTCACGCAGAAG                         ATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG
genomic: GACACCGTCACGCAGAAGgtgaggcttt ... ctatctgcagATTGTTGTTCATAAGACCAGTGCCAGGGGCACCCACTTCCGGCGTGCCGGG