1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGTAATTTTGCTTCTGGACTTGTCAAGATGGGCCACGACCTAGATAGTCATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatatcatgtgtgccattgtatcagaacacctgttggaacttgtgaagctctctgactgtagtatcatcttttttcttctag
species | Zea mays |
transcript | GRMZM2G079236_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211296212|gb|FL366279.1|FL366279
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211295628|gb|FL337561.1|FL337561
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTGTCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211388360|gb|FL321726.1|FL321726
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211059386|gb|FL366070.1|FL366070
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTGTCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211393326|gb|FL307372.1|FL307372
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTGTCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211067248|gb|FL339519.1|FL339519
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTGTCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211043811|gb|FL339055.1|FL339055
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGTEST: gi|211234600|gb|FL315445.1|FL315445
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
EST: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAG GGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
genomic: ATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatat ... tttcttctagGGATGCTTCCGACAAAATTTGACGGTTGTAACAATATATGCATCTCTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAATTTTGCTTCTGGACTTGTCAAGATGGGCCACGACCTAGATAGTCATGCTGCTATCTTCTCTGATACAAGAGCTGAGTGGATCATTGCTGCTCAGgtaatcatatcatgtgtgccattgtatcagaacacctgttggaacttgtgaagctctctgactgtagtatcatcttttttcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT