1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTGGTAACAGATATGTTGGAGTCAGCAAGGAAAGAGCTACTGTGCATAAGTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaacatagtttgcattcttctctgcgaatatgaagcgtgaacttggtgcagctcctgcaagcaatagctcgttttaactgaacgcagagaaca...
species | Zea mays |
transcript | GRMZM2G078839_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|211525105|gb|FL426868.1|FL426868
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|37401003|gb|CF637863.1|CF637863
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGATGCAGGAAGGAGEST: gi|91051896|gb|EB162314.1|EB162314
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|31998532|gb|CD662122.1|CD662122
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAEST: gi|32932813|gb|CF037625.1|CF037625
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGA
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|211317448|gb|FL406235.1|FL406235
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGATCCAGCTGTGCTTCTCCGCTGCAGGGAAG-AEST: gi|37379237|gb|CF626354.1|CF626354
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGG-AAGGA
EST: CCCCACTTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGATGCAGGAAGGAGEST: gi|211390321|gb|FL404127.1|FL404127
genomic: CCCCAC-TTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|149106149|gb|EE291827.2|EE291827
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|29946371|gb|CB816117.1|CB816117
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|71443317|gb|DR824367.1|DR824367
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|4753442|gb|AI657352.1|AI657352
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|76016568|gb|DT943738.1|DT943738
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|211514323|gb|FL422105.1|FL422105
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCANCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAREST: gi|211054870|gb|FL422547.1|FL422547
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAAACCAGCTGTGCTTCTCCGCTGCAEST: gi|31911224|gb|CD651817.1|CD651817
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAA-CCAGCTGTGCTTCTCCGCTGCA
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|33467615|gb|CF244664.1|CF244664
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|211426054|gb|FL384928.1|FL384928
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGEST: gi|211150053|gb|FL377210.1|FL377210
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|74234972|gb|DT642886.1|DT642886
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|15426680|gb|BI542502.1|BI542502
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|29947123|gb|CB816493.1|CB816493
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|29947032|gb|CB816448.1|CB816448
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|211082966|gb|FL420019.1|FL420019
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCTCATTTACAAAAAACTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGATGCAEST: gi|211518312|gb|FL387236.1|FL387236
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCA
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTEST: gi|94479251|gb|EB708209.1|EB708209
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCT
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTTTCCGCTGCAGGAAGGAGEST: gi|211162713|gb|FL378614.1|FL378614
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|15426825|gb|BI542647.1|BI542647
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGGAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|71443402|gb|DR824452.1|DR824452
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAGEST: gi|4388055|gb|AI491227.1|AI491227
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
EST: GTAGAGATCACCCCNCTTACAAGAAGCTCCTCAAGACACTTATTGTTCAG AGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTTTCCGCTGCAGGAAGGAG
genomic: GTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaa ... atctgaacagAGTTTGCTGCGCCTGAAAGAACCAGCTGTGCTTCTCCGCTGCAGGAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGTAACAGATATGTTGGAGTCAGCAAGGAAAGAGCTACTGTGCATAAGTAGAGATCACCCCACTTACAAGAAGCTCCTCAAGACACTTATTGTTCAGgtaagcagaacatagtttgcattcttctctgcgaatatgaagcgtgaacttggtgcagctcctgcaagcaatagctcgttttaactgaacgcagagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC