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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta...

Basic information

species Zea mays
transcript GRMZM2G078663_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078663_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaat---gaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-
|| ||||||||||| |||||||| || ||| | |||||||||||||||||||||||  | ||||| |||||||| | || | |    |       || |   ||  ||   ||  ||    |||  ||    | |   ||    ||   | | |  |   || |    ||   
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatcctttt----agattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt

upper sequence: GRMZM2G078663_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaatgaaattca-tgttgcctctagactatagcattgttcagcttcaccttgacta---
|||||||| ||||| || |||||||||||| | |||||||||||||| || ||||| |  |||   |||||| ||| | ||||  |        |   ||  ||  ||   |   |||    |  | | || |     |   |||      || |||||||||| || ||   
CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatg----gaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatatttaaatttagcttcacctagattagcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166653551|gb|EG277332.1|EG277332
EST:     TGATCCATCTATTAAAGATTTGCTGGCATCATTAGCACAGCCAGGGAGAG                         GAAGAGAAGAAGGAAGACAAGTTAGACAAAAC
genomic: TGATCCATCTATTAAAGATTTGCTGGCATCATT-GCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagGAAGAGAAGAAGGAAGACAAGTTAGACAAAAC