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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACTCGGGTCGAGCTCGCTGAAGTACCCAGGACAGCCGCAGGAAGTTCCCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagagaagggttgtcatttatatgcatttttactttgtctgatacagtgatatctcgtgtcctgatttgcacaactctgctgattatatggtactgtaccttggctagttttaagatattgttggagcttgggtagggtcaatttgttagtgtctacatctttctctttcttgcag

Basic information

species Zea mays
transcript GRMZM2G078508_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078508_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g34450.1 (Oryza sativa), 5'ss of exon 2
CTTACTCGGGTCGAGCTCGCTGAAGTACCCAGGACAGCCGCAGGAAGTTCCCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagagaagggttgtcatttatatgc-atttttactttgtctgatacagt---gatatctcgtgtcctgatttgcacaactctgctgattatatggtactgtaccttggctagttttaagatattgttggagcttgggtagggtcaatttgttagtgtctacatctttctctttcttgcag
||| || || || |||||  |||||||||| || ||||| |||||  | || ||||||||||| | ||||||| | ||||||||||||||||| || ||||||||| |    || | | ||||   ||  || |  | |||   |   |  ||     ||  |  |||   |||||    | | | |                                                                                                 
CTTTCTGGGATCAAGCTCAATGAAGTACCCTGGCCAGCCTCAGGAGATCCCTGTCTTTCAGAACAGCACATTTACTATCCCTGTAAATGATCCTCACCAGgtaaaacatgttggattttattttggtgggatgtgcaatttacatcgaagtgtttaattacattatgtttcgattttt-tatcgcag-------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32846002|gb|CD985683.1|CD985683
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
EST: gi|44900787|gb|CK827332.1|CK827332
EST:     CTGTCTTTCAGAATACCACATTTTTGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
EST: gi|5714349|gb|AI944334.1|AI944334
EST:     CCGTCTTTCAGAATACCCCATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCCCGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
EST: gi|211518499|gb|FL164993.1|FL164993
EST:     CCGTCTT-CAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
EST: gi|211477779|gb|FL449993.1|FL449993
EST:     CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAG                         GTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA
genomic: CCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagaga ... tttcttgcagGTCTGGAATTCTAATGAGCACGAAGATTTGCAAGTTCTTGTGATCATATCA