1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGAGTACAGGGTCCTCATGATCGGCCGCATCCTCGGAGGCATCGCCACCTCGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaaccgattgaccccagaggccagatccggctgccactctctgtctccactgctgctttagagctcctctctctgcctttaccttcaatccaaa...
species | Zea mays |
transcript | GRMZM2G077669_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|32803871|gb|CD956107.1|CD956107
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGGGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|211181672|gb|FL010880.1|FL010880
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGGCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCEST: gi|149009314|gb|EE041383.2|EE041383
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|211344699|gb|FL214759.1|FL214759
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCCGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCEST: gi|211184075|gb|FL010888.1|FL010888
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTTCAAAGCCATCTTCEST: gi|50336619|gb|CO531745.1|CO531745
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|211184079|gb|FL010892.1|FL010892
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCEST: gi|149016972|gb|EE154301.2|EE154301
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|211184070|gb|FL010883.1|FL010883
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAAGCTTTGACCCGCAGTGGCTGEST: gi|211184080|gb|FL010893.1|FL010893
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTG
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCAEST: gi|31354966|gb|CD439323.1|CD439323
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCA
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|8577312|gb|BE129949.1|BE129949
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|211184071|gb|FL010884.1|FL010884
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGEST: gi|74236381|gb|DT644295.1|DT644295
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAG
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|149030377|gb|EE286314.2|EE286314
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTCEST: gi|78110935|gb|DV529333.1|DV529333
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
EST: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAG AGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
genomic: CGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaac ... ctttttacagAGAGGCTTTGACCCGCAGTGGCTGTCCATAACATTCTCCAAAGCCATCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTACAGGGTCCTCATGATCGGCCGCATCCTCGGAGGCATCGCCACCTCGCTGCTCTTCTCCGCCTTCGAGTCCTGGCTCGTCGCAGAGCACAACAAGgtacagtaaccgattgaccccagaggccagatccggctgccactctctgtctccactgctgctttagagctcctctctctgcctttaccttcaatccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctctc