1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagccatgcctgcttttcacatgcccttgttttgagcgtaagcttcaaagggttccgaaaatgatgaactgaaaatttgtttttggggacaagcttttgaatagatcatactaggcttttccccttcggaagcttctgtcagatgtcaaacctggattttatgcataaactgcatttatgctgcag
species | Zea mays |
transcript | GRMZM2G077299_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|211106638|gb|FL406855.1|FL406855
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|6194987|gb|AW147091.1|AW147091
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|211024644|gb|FL381981.1|FL381981
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|211518127|gb|FL378400.1|FL378400
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|71769433|gb|DR967370.1|DR967370
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|211410871|gb|FL399291.1|FL399291
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|6194981|gb|AW147085.1|AW147085
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|101399286|gb|EB821516.1|EB821516
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCCATACTCCATCAAACATTGACCCATGGTCCEST: gi|211542545|gb|FL409073.1|FL409073
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCC-ATACTCCATCAAACATTGACCCATGGTCC
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|74232033|gb|DT639947.1|DT639947
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CACCCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGEST: gi|211152046|gb|FL419672.1|FL419672
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGG
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTNCCEST: gi|211148949|gb|FL408684.1|FL408684
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGT-CC
EST: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCMTCCATACTCCATCAAACATTGACCCATGGTCCAEST: gi|211464409|gb|FL419840.1|FL419840
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
EST: CAACCATGCAGGGGCTGGTGGCATATNGGCTGAACTTGTTAGTAACAGAG GGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
genomic: CAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagc ... tatgctgcagGGTTTGAAGCTGGAGGCCTCCATACTCCATCAAACATTGACCCATGGTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAACAGAGgtgattcagccatgcctgcttttcacatgcccttgttttgagcgtaagcttcaaagggttccgaaaatgatgaactgaaaatttgtttttggggacaagcttttgaatagatcatactaggcttttccccttcggaagcttctgtcagatgtcaaacctggattttatgcataaactgcatttatgctgcag
- - - - - - - - - - TGGTGG