1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAATTGGTATCATTGGGCCTATGGTTATCATAACAGTGATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcactttctcgccagattcactattctactttatcaatattacttattctgaaatctaacttgtcctggcag
species | Zea mays |
transcript | GRMZM2G077187_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATGATCTGCATCATGCCATACTAG GTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGEST: gi|76286378|gb|DV025946.1|DV025946
genomic: TATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGG
EST: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAG GTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGEST: gi|14243380|gb|BG841070.2|BG841070
genomic: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGG
EST: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAG GTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGEST: gi|61119018|gb|DN559979.1|DN559979
genomic: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGG
EST: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAG GTCTCCTATTTTCGGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGEST: gi|78079032|gb|DV507444.1|DV507444
genomic: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGG
EST: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAG GTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGEST: gi|86467943|gb|DY234313.1|DY234313
genomic: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGG
EST: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCGTGCCATACTAG GTCTCCTATTTTCEST: gi|76289091|gb|DV028659.1|DV028659
genomic: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTC
EST: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAG GTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGEST: gi|24934529|gb|CA452747.1|CA452747
genomic: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGG
EST: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAG GTCTCCTATTTTCAGT
genomic: GATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcac ... gtcctggcagGTCTCCTATTTTCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATTGGTATCATTGGGCCTATGGTTATCATAACAGTGATATACTTTAAGAAGAGAAATGTATATGATCTGCATCATGCCATACTAGgtacattcactttctcgccagattcactattctactttatcaatattacttattctgaaatctaacttgtcctggcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA