Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataatgttccccaatccccctttagttttggtgattctgcagaaaaccgttgatatctgttttttttttgggggggggggggggggtaaccata...

Basic information

species Zea mays
transcript GRMZM2G076826_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211035126|gb|FL190210.1|FL190210
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211509914|gb|FL437411.1|FL437411
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|18165025|gb|BM334870.1|BM334870
EST:     CTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: CTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|71441162|gb|DR822212.1|DR822212
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211192317|gb|FL065114.1|FL065114
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|71434664|gb|DR815714.1|DR815714
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211194714|gb|FL065125.1|FL065125
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211192306|gb|FL065103.1|FL065103
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|32914236|gb|CF019048.1|CF019048
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|6194643|gb|AW146747.1|AW146747
EST:     GTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: GTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|93016973|gb|EB642493.1|EB642493
EST:     ATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: ATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211194707|gb|FL065118.1|FL065118
EST:     AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG                         AGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataa ... tttcttacagAGAAGAGGCAGTCTGAGGCTAATCGGATCAGAGAGAAGTACCCTGACAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTGgttcgtataatgttccccaatccccctttagttttggtgattctgcagaaaaccgttgatatctgttttttttttgggggggggggggggggtaaccata

- -  AAGGAA
- - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - -  GGAGCA