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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATACCTTTTGCCTTCAAGAGAGTTGATGCCATGCTATACCGAGCCAATTTTGAGGCCGAAATAAATTACTTAATGAAATCTTTTGAGACATTAGAGgtacgctaaaatggtaatccatgctgcattaatccttctttcacttccatcattttgattactaacattatcactgacctgtgtatcaatccacaccgcagatttagacttataggtgcctaacatttcttcacttgttttcag

Basic information

species Zea mays
transcript GRMZM2G075921_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075921_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g10680.1 (Oryza sativa), 5'ss of exon 3
TGATATACCTTTTGCCTTCAAGAGAGTTGATGCCATGCTATACCGAGCCAATTTTGAGGCCGAAATAAATTACTTAATGAAATCTTTTGAGACATTAGAGgtacgctaaaatggtaatccatgctgcattaatccttctttcacttccatcattttgattactaacattatcactgacctgtgtatcaatccacaccgcagatttagacttataggtgcctaacatttcttcacttgttttcag
 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||| |||  || |||||||| ||  | |||||| |||||     | |    | |    || |      | |||   ||||  |||  | || |||   ||  | |  |     | ||    ||         |||  |                                    
GGATATACCTTTTGCCTTCAAAAGAGTTGATGCAATGCTATACCGAGCCAATTTTGAGACTGAAATAAATTACCTAAGAAACTCTTTTGAAACTCTGGAGgtatgctaagtcttttagtttt-ccatgttgaa-----tatcatcaccat--tttcaactattaaacctacaattagctgacatttcttgtcatgtttttactttttag-----------------------------------

upper sequence: GRMZM2G075921_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G40080.1 (Glycine max), 5'ss of exon 3
TGATATACCTTTTGCCTTCAAGAGAGTTGATGCCATGCTATACCGAGCCAATTTTGAGGCCGAAATAAATTACTTAATGAAATCTTTTGAGACATTAGAGgtacgctaaaatg-----gtaatccatgctgcattaatccttctttcacttccatcattttgattactaacattatcactgacctgtgtatcaatccacaccgcagatttagacttataggtgcctaacatttcttcacttgttttcag
|||||| ||||||||||| || |||||||| || ||||||||  ||||||| ||||| || ||| | || ||| | |  || |||||| | ||  | |||||      || |       | || ||  |     ||||| ||  || | ||   || |   ||  ||||||   |||| |    ||  ||||  ||                                                     
TGATATTCCTTTTGCCTTTAAAAGAGTTGAAGCTATGCTATATAGAGCCAACTTTGACGCAGAAGTTAACTACCTTAGAAAGTCTTTTCAAACCATGGAGgtctagctaactatttcaatgattcaatcccttgtaatctttgatttatttatctcttccagaaaactaac-caatcagttg--tgaatatctttcag---------------------------------------------------

upper sequence: GRMZM2G075921_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv07s0129g00220.t01 (Vitis vinifera), 5'ss of exon 3
TGATATACCTTTTGCCTTCAAGAGAGTTGATGCCATGCTATACCGAGCCAATTTTGAGGCCGAAATAAATTACTTAATGAAATCTTTTGAGACATTAGAGgtacgctaaaatggtaatccatgctgcattaatccttctttcacttccatcattttgattactaacattatcactg-acctgtgtatcaatccacaccgcagatttagacttataggtgcctaacatttcttcacttgttttcag
 ||||| || | ||| ||||| |||||||| |||||||||||| |||||||||||||  | ||| |||| ||| | | ||| || ||| | ||  ||||||||   | ||    ||||   |    || |      | ||| | ||| ||  |    |  | | |     ||| |  | ||   | || | | |  ||                                               
CGATATCCCATATGCATTCAAAAGAGTTGAAGCCATGCTATACAGAGCCAATTTTGATACAGAAGTAAAATACCTGAGGAAGTCCTTTCAAACCCTAGAGgtattgtcaa-caataatttctagcccaattgcatctttttaaattctatgctaaacaagattcagtgcctcattttatcttgatctccagcaatcccatg--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166537369|gb|EG257636.1|EG257636
EST:     TTTTGAGACATTAGAG                         GCAGCCTGCGAAGATCTCAGAGGCAGCAGGTTGTTCCTGAAACTACTCGAG
genomic: TTTTGAGACATTAGAGgtacgctaaa ... ttgttttcagGCAGCCTGCGAAGATCTCAGAGGCAGCAGGTTGTTCCTGAAACTACTCGAG