1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGAACGCGGAGCTGAAGATCGTCGACCCCGACACCGGCGCCGCCCTCGGCCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgcacaccgccccagccgttgacttgtcatctcatttctttgcagttgcagctgtaggctgtatagcgctcgtgttcgcaaaatatggccatct...
species | Zea mays |
transcript | GRMZM2G075333_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|91053777|gb|EB164195.1|EB164195
genomic: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: GATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|149109199|gb|EE293185.2|EE293185
genomic: GATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: CCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|71450117|gb|DR831167.1|DR831167
genomic: CCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|94474315|gb|EB703273.1|EB703273
genomic: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|71774578|gb|DR972456.1|DR972456
genomic: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: CCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|76287908|gb|DV027476.1|DV027476
genomic: CCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: ACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|78109184|gb|DV527601.1|DV527601
genomic: ACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCTEST: gi|18660517|gb|BM500903.1|BM500903
genomic: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
EST: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAG GTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
genomic: CCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgca ... ctttctgcagGTTACCTGAACGACCCCGAGTCGACGAAGAACACCATCGACAAGGACGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAACGCGGAGCTGAAGATCGTCGACCCCGACACCGGCGCCGCCCTCGGCCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGAAAGgtgcgccgcacaccgccccagccgttgacttgtcatctcatttctttgcagttgcagctgtaggctgtatagcgctcgtgttcgcaaaatatggccatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaata