1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCGAGCCCTACTCCGTGGAGGTCACCCAGGGTGGCGAGCTACTCGTAATGGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgctctggctgacctcctcctcctcctagccccccttgaatccggcatgttttgctgttagtcccgagggccccccggcgccccgctaattat...
species | Zea mays |
transcript | GRMZM2G075260_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAANGATTTCCTGGTCATGEST: gi|211042150|gb|FL156952.1|FL156952
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATGEST: gi|211042152|gb|FL156954.1|FL156954
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATGEST: gi|50334127|gb|CO529253.1|CO529253
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATGEST: gi|71436276|gb|DR817326.1|DR817326
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATGEST: gi|31357778|gb|CD442135.1|CD442135
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATGEST: gi|78081385|gb|DV509797.1|DV509797
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATGEST: gi|71327834|gb|DR800547.1|DR800547
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
EST: GACTCCATGAACAGCAACCATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATEST: gi|148939778|gb|EC884477.2|EC884477
genomic: GACTCCATGAACAGCAAC-ATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATA-GCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCAT
EST: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGAT ATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
genomic: GGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgc ... aacaatgcagATAGCAGGCCAAAGCTTGTTGCTGGTTCTCCAGAAGGATTTCCTGGTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGAGCCCTACTCCGTGGAGGTCACCCAGGGTGGCGAGCTACTCGTAATGGACTCCATGAACAGCAACATCTACAGGATGGCGCTGCCGCTGTCCCGATgtgagtgcgctctggctgacctcctcctcctcctagccccccttgaatccggcatgttttgctgttagtcccgagggccccccggcgccccgctaattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG