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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATACGGCTTCCGTTCTGCACGAGGCGCTGGGGTACATACGCTTCCTGCACGACCAGGTTCAGgtgcgccgtttactatacattactacagtaatgctccctccctccctccctcgatgcatacgaacaagcgcagtacacgatgcttggtacagtgcgtccc...

Basic information

species Zea mays
transcript GRMZM2G074501_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074501_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g55220.1 (Oryza sativa), 5'ss of exon 5
TCTGATACGGCTTCCGTTCTGCACGAGGCGCTGGGGTACATACGCTTCCTGCACGACCAGGTTCAGgtgcgccgtttactatacattactacagtaatgctccctccctccctccctcgatgcatacgaacaagcgcagtacacgatgcttggtacagtgcgtccc-----------------------------------------------------------------------------------------------
||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |      | | ||    |   | | || | |      |  | || |||    || | ||| |||||||  || |   |||||| | |                                                                                                    
TCTGATACGGCCTCCGTTCTTCACGAGGCGTTGGGATACATACGCTTCCTGCACGACCAGGTTCAGgtgcgccatcactactccgtttgccccccatttcttcttggtcttcgtcttctatgagctcggaaaag-gcagtactgga-gtagggtacattacacaaagaaggctttgtcctttgtaataagctgtttatagtagtactgtactaccaccactgtgtccgggactcattgccaccggttgcttttcgtgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28568865|gb|CB280740.1|CB280740
EST:     TTCTGCACGAGGCGCTGGGGTACATACGCTTCCTGCACGACCAGGTTCAG                         GTCCTGAGCACGCCGTACATGCAGATGCAGCGCCAGCCGGCCTCGGCGCAC
genomic: TTCTGCACGAGGCGCTGGGGTACATACGCTTCCTGCACGACCAGGTTCAGgtgcgccgtt ... tacgtgtcagGTCCTGAGCACGCCGTACATGCAGATGCAGCGCCAGCCGGCCTCGGCGCAC
EST: gi|26557235|gb|CA829470.1|CA829470
EST:     TCTTGGACGAGGCGCTGGGGTACATACGCTTCCTGCACGACCAGGTTCAG                         GTCCTGAGCACGCCGTACATGCAGATGCAGCGCCAGCCGGCCTCGGCGCAC
genomic: TC-TGCACGAGGCGCTGGGGTACATACGCTTCCTGCACGACCAGGTTCAGgtgcgccgtt ... tacgtgtcagGTCCTGAGCACGCCGTACATGCAGATGCAGCGCCAGCCGGCCTCGGCGCAC
EST: gi|101387619|gb|EB815824.1|EB815824
EST:     TTCTGCACGAGGCGCTGGGGTACATACGCTTCCTGCCCGACCAGGTTCAG                         GTCCTGAGCACGCCGTACATGCAGATGCAGCGCCAGCCGGCCTCGGCGCAC
genomic: TTCTGCACGAGGCGCTGGGGTACATACGCTTCCTGCACGACCAGGTTCAGgtgcgccgtt ... tacgtgtcagGTCCTGAGCACGCCGTACATGCAGATGCAGCGCCAGCCGGCCTCGGCGCAC