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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCGGCCAGCAACCCCACCGGACGGAGAGTCAGAATTTACTGATGATGATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactgcttatctgtccttgccatggctagctaaatacactgcctagttccatccattaattgactgactttccaccaagcttaggtctctagtac...

Basic information

species Zea mays
transcript GRMZM2G074351_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074351_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g41910.1 (Oryza sativa), 5'ss of exon 3
TGAGCGGCCAGCAACCCCACCGGACGGAGAGTCAGAATTTACTGATGATGATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactgcttatctgtccttgccatggctagctaaatacactgcctagttccatccattaattgactgactttccaccaagcttaggtctctagtac-
||| ||||||||||||||||| || || |||   |||||||||||||||||||| ||  ||||||| ||||| |||    |||||||||||||||||||||||||| || |  | ||    ||   | |   |  ||   |       |  ||       ||  |    |  | |   |      |||| | |   ||   
TGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGATGATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAgtgagtgcttccaacctcctgttcttaggttcatttactcatgacttttgtttttggtagttc-tgattttgcctgagatattaattagatattgtgtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32836816|gb|CD976494.1|CD976494
EST:     TACTTTGAGGGCATGGGTTCCTCAA                         AATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
genomic: TACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... atctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
EST: gi|211141174|gb|FL018636.1|FL018636
EST:     ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA                         AATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... atctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
EST: gi|211475994|gb|FL018626.1|FL018626
EST:     ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA                         AATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... atctttatagAATGATGCATCTGGTAGCAAGGAAGGTTATGCTGTTGAAGAGATGACTTTT