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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcag

Basic information

species Zea mays
transcript GRMZM2G074300_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 5'ss of exon 3
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcag
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| | |  | |    | | ||| | | |      |||  | |        | |||| |     |  || | | ||  |||  |    |||||| | |        
AGCCAAGTCCATGAAGTTCAAGGATGGTTACATGATCTCATCTGGTCAGCCAGTCAATGAGTACATTGACTCGGCTGTGAGACACGTGCTCCTGAGACAGgtttgtttggttcaactcaagcatcgtagtatttaaaaacctcatgat--------ctttttgg-----ctcaacgcacttgttcatta----tcttttgcag--------

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgac-gttccaaatgtaatttctcaacaaacatcttttt--ctgtcgtgcag--------------------------------------------------
 |||||||| ||||| |||||||||||||||||||||||||| ||    || || ||||| || || |||   || || ||||||||  | ||  | ||||| |     | |    |||         |||| |  |  ||  || | |   | || || |||||  ||| | |   |    |   |  ||| |  | | |   ||  ||                                                      
GGCCAAGTCTATGAAATTCAAGGATGGCTACATGATCTCATCCGGAAGCCCCGTCAATGATTATATTGACAGTGCCGTTAGACACGTTATGCTGCGTCAGgtattaacagatttttttgat-acccctatgtttactcctccttgtgcag--aattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcag

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgt----tttgctacaattgcccgttgtaatgtctgtttgtct---ctgggtaagcacttcattttcg----acgttccaaatgtaatttctcaacaaacatctttttctgtcg-tgcag-------
 ||||||||||||||||||||||| ||||| ||||| ||||| ||    || || || || ||||| ||    ||||| ||||||||| |  |  ||||||| |||     ||  ||   ||    ||  | |  | | | || |    || | |     | || |||| |    |  | || |||  | | | |  ||      ||||||   |   ||          
TGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTGATAGCGCTGTTAGACACGTCATGTTGCGACAGgtatgtggatcttcatagtgtttttggtcttcaattttctctgacgatgctagatttcgtcatcgtttttgctctatatacctaatccagtgtattgacgtgttacttttttaattactgttcttggcag

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgtaatgt---ctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatt-tctcaaca-------aacatctt----tttctgtcgtgcag----------------------------
 |||||||| |||||||||||||| ||||||||||| ||||| ||    || || ||||| |||||||||   ||||| || |||||| |  |  | ||||| ||||    ||   ||| || ||    |||   |||  | | ||||| |   | | | ||  |    ||  |||||  | || ||||| ||       ||    ||    || | || ||| |                             
GGCCAAGTCTATGAAGTTCAAGGACGGCTACATGATTTCATCCGGAAGCCCTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca-tatccttggccatttctctgttaactgagtttttctggctcttc-ccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctag

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgtt-gtaatgtctgtttgtctctgggtaagcact---tcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgt---cgtgcag
 || ||||||||||||||||||||||| |||||||||||||||||    || || || || |||||||||   || ||  |||||||  |  |  | |||||               || ||||  |||    || |||    || |  |   | |   | ||  |||  |||||  | || | |    |    |    |  ||  ||     | |||
TGCTAAGTCCATGAAGTTCAAGGATGGTTACATGATCTCATCTGGGAGCCCTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacag

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttc---attttcgacgttccaaatgtaatttc-tcaacaaacatctttttctgtcgtgcag-----------------------
||||||||| |||||||||||||||||||||||||| ||||| ||    || || || || ||||||||    ||||| ||||||||| |  |  |||||||||||   ||  | |||    | |||  | |||||      || | | |   || |     | |     ||| | |   ||| || |   |||      | |  |||     ||                       
AGCCAAGTCTATGAAGTTCAAGGATGGCTACATGATTTCATCAGGAAGCCCCGTCAACGATTACATCGATAGTGCTGTCAGACACGTCATGTTACGACAGgtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttatttttttcag

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgt-aatgtctgtttgtctctgggt------aagcact------tcattttcgacgttccaaatgtaatttctcaacaaacatctt---tttctgtcgtgcag--------
 || |||||||||||||||||||| || |||||||| ||||||||    || || || || ||||| ||    ||||| ||||||||| |  |  ||||||| |  ||  |  |  ||     |||| | | ||      || ||| ||      ||  | |      |||||    | | ||      || ||| | |  |   ||||    |||  |  ||            
TGCAAAGTCCATGAAGTTCAAGGACGGATACATGATATCATCTGGAAGCCCTGTCAACGACTACATTGATAGTGCTGTAAGACACGTCATGTTGCGACAGgtattcttgacagctttttaatcttgttagtctcaaccgttcactgagtttcttcaattattgtgatttcattcggaaggctcgtttattagttttttactacgaatctcaggttttggatgtatgtttttgcag

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaatt-gcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcag
 |||||||| |||||||||||||| || ||||||||||| |||||    || ||||| |||| ||| |||   || ||| | ||||||||  |  | |||||       || | || | |  |||| | || |   |     |     |||||| |  ||| |    |                                            
CGCCAAGTCGATGAAGTTCAAGGACGGATACATGATCTCGTCTGGCAGCCCCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgt-------gcaagaactcgatcgttttgatttggatccagtttc---taagcattggattgttctggcag-----------------------------------------

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaatt-gcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcag
 |||||||| |||||||||||||| || ||||||||||| |||||    || ||||| |||| |||||||   || ||| | ||||||||  |  | |||||       || | || | |  |||| | || |   |     |     |||||| |  ||| |    |                                            
CGCCAAGTCGATGAAGTTCAAGGACGGATACATGATCTCGTCTGGCAGCCCCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgt-------gcaagaactcgatcgttttgatttggatccagtttc---taagcattggattgtgctggcag-----------------------------------------

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcag
 |||||||| |||||||||||||| || ||||||||||| |||||    || ||||| |||| ||| |||   || ||| | ||||||||  |  | |||||            | | |  | || | || |   |     |     |||||| |  ||| |    | |   |                                      
CGCCAAGTCGATGAAGTTCAAGGACGGATACATGATCTCGTCTGGCAGCCCCGTGAACGAGTTCATTGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgtaca------agaactcgatcattttgatttggatccagtttc---taagcattggattgtgctggctggcag-------------------------------------

upper sequence: GRMZM2G074300_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 5
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaatt-gcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcag
 |||||||| |||||||||||||| || ||||||||||| |||||    || ||||| |||| |||||||   || ||| | ||||||||  |  | |||||       || | || | |  |||| | || |   |     |     |||||| |  ||| |    |                                            
CGCCAAGTCGATGAAGTTCAAGGACGGATACATGATCTCGTCTGGCAGCCCCGTGAACGAGTTCATCGACAGGGCCGTGCGCCACGTCCTTTTGCGCCAGgt-------gcaagaactcgatcgttttgatttggatccagtttc---taagcattggattgttctggcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88753248|gb|DY537389.1|DY537389
EST:     CTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|18177081|gb|BM378291.1|BM378291
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|32848633|gb|CD988314.1|CD988314
EST:     ACATTGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: ACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|21988014|gb|BQ779542.1|BQ779542
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|110195743|gb|EC877640.1|EC877640
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|5455784|gb|AI833474.1|AI833474
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|15053893|gb|BI359438.1|BI359438
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|89251253|gb|DY623039.1|DY623039
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|29576817|gb|CB616929.1|CB616929
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|9732270|gb|BE511022.1|BE511022
EST:     CATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211357463|gb|FL472121.1|FL472121
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211129665|gb|FL448923.1|FL448923
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211286416|gb|FL307757.1|FL307757
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|28568922|gb|CB280797.1|CB280797
EST:     CCGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|37397796|gb|CF636206.1|CF636206
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|211289717|gb|FL361719.1|FL361719
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAG--C
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|111193194|gb|EE291330.1|EE291330
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|71436667|gb|DR817717.1|DR817717
EST:     CGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|29129878|gb|CB380582.1|CB380582
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|33101603|gb|CF061563.1|CF061563
EST:     GTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: GTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|22543011|gb|BU093449.1|BU093449
EST:     CAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|78108620|gb|DV527038.1|DV527038
EST:     CACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|33096193|gb|CF056187.1|CF056187
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|113589011|gb|DW753808.1|DW753808
EST:     AATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: AATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|4886195|gb|AI677315.1|AI677315
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
EST: gi|6127310|gb|AW129835.1|AW129835
EST:     CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAG                         GGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC
genomic: CAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttg ... tgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCGACTCAGCTGTGAGACACGTCCTCCTCAGACAGgtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgtcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
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