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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGAGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGATAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttttccttcagctttactgtagactttctgttgccattcttgttggtgtcgcaacatgtttatctgctaaacttgaaatttattacaaaaaacag

Basic information

species Zea mays
transcript GRMZM2G073788_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073788_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g15594.1 (Oryza sativa), 5'ss of exon 3
GTCATGGAGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGATAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttttccttcagctttactgta--gactttctgtt-gccattcttgttggtgtcgcaac--atgtttatctgctaaactt--gaaatttattacaaaaaacag------
||||||||||| ||||||||||||||||||||| |||  | ||||| || || ||||| || |||||||| ||| ||||||||||||||||||| ||||||| ||||| || || |   ||||  |      | ||||||  || || || |    || || |   ||  |||||| || |||||  ||||   |   ||||| | |       
GTCATGGAGGACCACGTGCTGCTGAGTATTTGAAGGAAAATTTGTTCGAAAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAAgtaatttttctctttgattcttacctttccagttctctgttcaccttttttttaaaggttgctaatgattattatcttctcaacttttgaaaaaaaaatcaaaacataacaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78125863|gb|DV544247.1|DV544247
EST:     TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA                         GTGAAACATATCAGAAAACAGATAC
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATAC
EST: gi|71438954|gb|DR820004.1|DR820004
EST:     TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA                         GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: gi|149077211|gb|EE165878.2|EE165878
EST:     TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA                         GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: gi|50330958|gb|CO526084.1|CO526084
EST:     TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA                         GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: gi|149080584|gb|EE169627.2|EE169627
EST:     TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA                         GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: gi|149078330|gb|EE167097.2|EE167097
EST:     TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA                         GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCAAGCG
EST: gi|50326055|gb|CO521181.1|CO521181
EST:     TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAA                         GTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCA
genomic: TAACCTTCTCAAGCACCCTGATTTCTTGACAGATACAAAGCTTGCGATAAgtattttttt ... caaaaaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTGGAATCAGAAGCA