ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctacttctcaattcatgatgccatgtttttttttatattgtggttttacataatacatagcatcttccagcttcctgaagagtattactgaatagattgataacatcatacacacgaagttcatcttgaacatgcttattagtgttctgtttgcatctgatggtatggcatcatctttgatag

Basic information

species	Zea mays
transcript	GRMZM2G073535_T03
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G073535_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g41900.3 (Oryza sativa), 5'ss of exon 2

------------------------TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctacttctcaattcatg-atgccatgtttttttttatattgtggttttacataatacatagcatcttccagcttcctgaagagtattactgaatagattgataacatcatacacacgaagttcatcttgaacatgcttattagtgttctgtttgcatctgatggtatggcatcatctttgatag
                        |||||| |  ||||||| || ||   ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |        ||| |||||  |||| |  |  |   | | |       |||  |||||   |     |||||  ||   |||||   | |  || |||| ||||| ||                                                                               
ACATAAAGACCAACGAGTAAAAGCTTGATCTGTCCGGTGCCAACCAA---TCAACAAACAAGTTTCATGTCTGATCTCGACGTTCAGCTTCCATCTGCCTTCGgtacg------cttcagttcatctatgctacctcctgaatga-acca-aactttgtataatt--tgatcacttcctcctgaatgaagcaaact-ttgtatagtttgatcac-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211042766|gb|FL410377.1|FL410377

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACATCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32915153|gb|CF019965.1|CF019965

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211230158|gb|FL409273.1|FL409273

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32915467|gb|CF020279.1|CF020279

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCTTTTTTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|15499205|gb|BI595718.1|BI595718

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211156527|gb|FL392740.1|FL392740

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211011074|gb|FL374943.1|FL374943

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211254796|gb|FL420511.1|FL420511

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211305757|gb|FL427561.1|FL427561

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211199110|gb|FL383374.1|FL383374

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|76921765|gb|DV168690.1|DV168690

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|28188096|gb|CB179706.1|CB179706

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211433580|gb|FL370258.1|FL370258

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211275053|gb|FL384325.1|FL384325

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGMTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211334569|gb|FL404956.1|FL404956

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211063352|gb|FL405209.1|FL405209

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211285944|gb|FL386655.1|FL386655

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211085791|gb|FL424013.1|FL424013

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211026953|gb|FL376200.1|FL376200

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211085125|gb|FL402167.1|FL402167

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|91874020|gb|EB403977.1|EB403977

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211497349|gb|FL428240.1|FL428240

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211247535|gb|FL400484.1|FL400484

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211307645|gb|FL422279.1|FL422279

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACATCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211516500|gb|FL413391.1|FL413391

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32915137|gb|CF019949.1|CF019949

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCCGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211042926|gb|FL416917.1|FL416917

EST:     TTGATCAGCTCGGTGCCTACNAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211212956|gb|FL427990.1|FL427990

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211360773|gb|FL397053.1|FL397053

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|28930990|gb|CB334351.1|CB334351

EST:     TTGATCAGCTCGGGGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211048901|gb|FL419489.1|FL419489

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|89758566|gb|DY687700.1|DY687700

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211137601|gb|FL389979.1|FL389979

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|7238123|gb|AW573345.1|AW573345

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211401208|gb|FL425455.1|FL425455

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32915018|gb|CF019830.1|CF019830

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32864981|gb|CF004663.1|CF004663

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211006247|gb|FL408517.1|FL408517

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211163031|gb|FL401341.1|FL401341

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211490127|gb|FL369784.1|FL369784

EST:     TGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG          
genomic: ACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagA

EST: gi|14244595|gb|BG842533.2|BG842533

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|61119129|gb|DN560090.1|DN560090

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211142008|gb|FL420863.1|FL420863

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32937269|gb|CF042088.1|CF042088

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211108516|gb|FL304066.1|FL304066

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32864386|gb|CF004068.1|CF004068

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|85152766|gb|DW587846.1|DW587846

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32910492|gb|CF015304.1|CF015304

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211212010|gb|FL385207.1|FL385207

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211207669|gb|FL419154.1|FL419154

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211156671|gb|FL403861.1|FL403861

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211042145|gb|FL385023.1|FL385023

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211129120|gb|FL371880.1|FL371880

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|6021595|gb|AW066523.1|AW066523

EST:     GTGA-CAGCTCGG-GCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211426213|gb|FL392510.1|FL392510

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211258667|gb|FL369168.1|FL369168

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211539652|gb|FL413038.1|FL413038

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211106682|gb|FL304033.1|FL304033

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|32865535|gb|CF005217.1|CF005217

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211176640|gb|FL423185.1|FL423185

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211431054|gb|FL372124.1|FL372124

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|13490598|gb|BG517362.1|BG517362

EST:     TCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG                         ATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA
genomic: TCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGA

EST: gi|211468697|gb|FL380602.1|FL380602

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211079514|gb|FL399428.1|FL399428

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211153095|gb|FL375819.1|FL375819

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|6012307|gb|AW061663.1|AW061663

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211332492|gb|FL407989.1|FL407989

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|78122596|gb|DV540980.1|DV540980

EST:     TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211134617|gb|FL369499.1|FL369499

EST:     TTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|211229493|gb|FL371563.1|FL371563

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

EST: gi|9732040|gb|BE510792.1|BE510792

EST:     GTGATCAGCTCGGTGCCAACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTG
genomic: GATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1416

TTGATCAGCTCGGTGCCTACAAAACCTCAACAACCAAGTTTCATGTCTGATCTCGACGTCCAGCTTCCATCTGCCTTTGgtatggctac ... tctttgatagATCCGTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTCCTGGAACGAAGGATTATGTGCATGTGCGCATCCAGCAGCGCAACGGCAGAAAGAGTCT

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2510