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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttttgtcacccaatttgtcgattttatttgcctttattactttgatttctaatttctttagactgaatccatgtgatgttttgagtaataaaa...

Basic information

species Zea mays
transcript GRMZM2G073077_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073077_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g25420.2 (Oryza sativa), 5'ss of exon 3
-CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttttgtcacccaatttgtcgattttatttgcctttatt--actttgatttctaatttctttagactgaatccatgtgatgttttgagtaataaaa
 ||| ||||||||||| |||||| | |||||||||| |||| |||||||||||||||||| | || || ||||| || || |||||||||||||||||||||||||||  |    || |      ||  || | ||  | | ||||  | | |    | | ||||   |  ||  |||     |     |   | || |    
ACATCTATGAGCATGCAGTTGTTCT-GAGTGTGAAAATTGAAGACCAAGATGCATTTGAAAGGGACTTTTGTCAACTCAAACCTTATTACATGGATACATGgttagttcctgtctacacttcacatcagttctgttaccgtatattcaattgtaggctgtcattttgatgcacgtaattttcttttatctaccattagttt--

upper sequence: GRMZM2G073077_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G25730.1 (Glycine max), 5'ss of exon 3
-CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttttgtcacccaatttgtcgattttatttgcctttattactttgatttctaatttctttagactgaatccatgtgatgttttgagtaataaaa-----
  || || ||||||||||||||  || |||||||||  |||||| |||||||| |||||| | |||||||  ||| | ||||||||||| |  ||| | |||| |  ||||  |  |||  ||| |  | | |     |   |    ||   |          |  | |||   |||| | ||||  ||    ||| | ||     
ATATATACGAGCATGCTGTTGTCCTT-AGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgt-aacttttcttgtcccttttttttcactctgaagacagctgaatctgcaaccaaagcaaacaatggac---atcc-tctgattgttcacttaacataaacctg

upper sequence: GRMZM2G073077_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G08690.1 (Glycine max), 5'ss of exon 3
-CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttttgtcacccaatttgtcgattt-----tatttgcctttattactttgatttctaatttctttagactgaatccatgtgatgttttgagtaataaaa
  || |||||||||||||||||  || ||||||||| ||||||| |||||||| || ||| | |||||||  ||| | ||||||||||| |  ||| | |||| | || ||  |  |||  ||| |  |  |     ||| |   |||| |     ||   || | | ||| |  |  |    |         |    | ||    
ATATATATGAGCATGCTGTTGTCCTT-AGTGTGAAAATTGAGGATCAAGATGCTTTCGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttattcttgtcccttttttttcacatataaatatatatttttactctgaagaaagctgaat-cttcaaccaaagcaaacagtggacatctcctgat----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211204476|gb|FL397886.1|FL397886
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211221445|gb|FL389599.1|FL389599
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|23357704|gb|BU645353.1|BU645353
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|74240003|gb|DT647917.1|DT647917
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|5555446|gb|AI881397.1|AI881397
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211343978|gb|FL410639.1|FL410639
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211202662|gb|FL427928.1|FL427928
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|71428537|gb|DR809587.1|DR809587
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|21987255|gb|BQ778783.1|BQ778783
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|56382239|gb|CV984908.1|CV984908
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211521193|gb|FL395748.1|FL395748
EST:     GCATTTGAACGTGATTTCTGCCAGCTCAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211466169|gb|FL380588.1|FL380588
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211160049|gb|FL415236.1|FL415236
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCNAGAGGAGTACCCAATTTKGGGACTCAATC
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACC-AGAGGAGTACCCAATTTTGGGACTCAATC
EST: gi|211045344|gb|FL397284.1|FL397284
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211259601|gb|FL417871.1|FL417871
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|19057828|gb|BM736495.1|BM736495
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|120480690|gb|EH210959.1|EH210959
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCYAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211149119|gb|FL417450.1|FL417450
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|76013186|gb|DT940356.1|DT940356
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211273315|gb|FL388187.1|FL388187
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211238673|gb|FL405238.1|FL405238
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211244803|gb|FL372839.1|FL372839
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|76013187|gb|DT940357.1|DT940357
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211123288|gb|FL412657.1|FL412657
EST:     GCATTTGAACGTGATTTCTGCCAGCTCAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|60343651|gb|DN210624.1|DN210624
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|32910399|gb|CF015211.1|CF015211
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211488047|gb|FL401996.1|FL401996
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211180868|gb|FL091536.1|FL091536
EST:     GCATTTRAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211071747|gb|FL413442.1|FL413442
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|71331372|gb|DR802521.1|DR802521
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211403085|gb|FL391554.1|FL391554
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|148947219|gb|EC892573.2|EC892573
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211290626|gb|FL412730.1|FL412730
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211257382|gb|FL426637.1|FL426637
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|60358231|gb|DN225204.1|DN225204
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|56382240|gb|CV984909.1|CV984909
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|50327367|gb|CO522493.1|CO522493
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|32910449|gb|CF015261.1|CF015261
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|9255128|gb|BE345596.1|BE345596
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211207035|gb|FL397427.1|FL397427
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAAGAGTAC
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTAC
EST: gi|211368876|gb|FL402356.1|FL402356
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
EST: gi|211144477|gb|FL393223.1|FL393223
EST:     GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATG                         TGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT
genomic: GCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 148

CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCTGAGTTCCATACTGAGCTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 190

CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCTGAGTTCCATACTGAGCTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 174

CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCTGAGTTCCATACTGAGCTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 142

CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttt ... atttatgcagTGGCATAATTCCCCCCTCACCAGAGGAGTACCCAATTTTGGGACTCAATCTTCTGAGGCTGTTGGTTCAGAATAGAATTGCTGAGTTCCATACTGAGCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTTATGAGCATGCTGTTGTTTTTGAGTGTGAAACTTGAGGACCAAGATGCATTTGAACGTGATTTCTGTCAGCTAAAGCCTTATTACATGGATACATGgttagttttttgtcacccaatttgtcgattttatttgcctttattactttgatttctaatttctttagactgaatccatgtgatgttttgagtaataaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA