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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAGGAGCAATACAAAAATTGTTCGAGGGTCACCATATGAATTATATCGAGTGTATTAATGTTGAGTCTAAATCTACCAGGAAAGAGTCATTCTATGgtaggtaacaaggggaaaatatgaacttgttttgatgttttattagttgacaaaagtcaataccatacttgtttacttcttttccacaggtcttgcactcgatgtctatgaacatgttttggtgttttattagttggcaagagtcaatatcatacttgtttgtttacttcttttccacag

Basic information

species Zea mays
transcript GRMZM2G071441_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGAAGGAGCAATACAAAAATTGTTCGAGGGTCACCATATGAATTATATCGAGTGTATTAATGTTGAGTCTAAATCTACCAGGAAAGAGTCATTCTATGgtaggtaacaaggggaaaatatgaacttgttttgatgttttattagttgacaaaagtcaataccatacttgtttacttcttttccacaggtcttgcactc-gatgtctatgaacatgttttggtgttttattagttggcaagagtcaatatcatacttgtttgtttacttcttttccacag
||||| ||| |||||||| || | || ||||| |||||||||||||| || ||||| || ||||| || | |||||||||  ||||||| ||||| || ||||  ||  ||    | | ||| | ||  || |  | || ||||  |  |||    |    ||     |   ||| |   |||  |||    |||||||| | |||||      ||  | |         ||  ||| || |    ||| | ||    |                      
GTGGAGGGAACAATACAACAACTTTTTGAGGGCCACCATATGAATTACATTGAGTGCATAAATGTAGATTTTAAATCTACACGGAAAGAATCATTTTACGgta--tagtaatat-acattatca-ctctttgtcttattctatt--tctaca----tttgcactcggttgtcttattctatttatacaa---ttgcactctgttgtct-----tattctatcacaccaactttattgtcatgttctaatcttatggcag----------------------

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
GTGGAAGGAGCAATACAAAAATTGTTCGAGGGTCACCATATGAATTATATCGAGTGTATTAATGTTGAGTCTAAATCTACCAGGAAAGAGTCATTCTATGgtaggtaacaaggggaaaatatgaacttgttttgatgttttattagttgacaaaagtcaataccatacttgtttacttcttttccacaggtcttgcactcgatgtctatgaacatgttttggtgttttattagttggcaagagtcaatatcatacttgtttgtttacttcttttccacag
||||| ||| ||||||||||  | || || |||||||| |||||||| || ||||| |||||||| || |  ||||||||  ||||||||||||| ||||||| || |     |  ||| |  |||   | ||  |||| | | | || |    |  |  || ||||     ||| |  | |   ||     || ||   | ||||| ||| | | ||   |                                                          
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttat----gtgaaacagtaacccatcttc-tgttgtctgaatttattggaagc--taacata-----ttaataatatcaaactaactttacagctg-tgtctttga-cttattccag----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934895|gb|CF039707.1|CF039707
EST:     CGAGTGTATTAATGTTGAGTCTAAATCTACCAGGAAAGAGTCATTCTATG                         ATCTTGCACTCGATGTCAAGGGATGTTCTGATGTCTATGCATCATTTGATA
genomic: CGAGTGTATTAATGTTGAGTCTAAATCTACCAGGAAAGAGTCATTCTATGgtaggtaaca ... ttttccacagATCTTGCACTCGATGTCAAGGGATGTTCTGATGTCTATGCATCATTTGATA