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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAGTTGTTTTGTGACAAGGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttgtcatgtctgtgtgagcaactgagcatgcacaaggggattcacacaactaatttgactattggtgcatccgtgtag

Basic information

species Zea mays
transcript GRMZM2G071010_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071010_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S60_129V6.1 (Physcomitrella patens), 5'ss of exon 4
GCTGAAGTTGTTTTGTGACAAGGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttgt-----catgtc------tgtgtgagcaactgagc-atgcacaaggggattcacacaactaatttga-ctattggtgcatccgtgtag----------------------------
  ||||||| ||||| |||||||||||||| || ||||| ||| |||| |||||||||||  ||||||| |||||    || ||    ||||||||| ||||||  ||| |     ||| ||      |   ||| |  ||   |  || |    | | ||| |  |  ||  |  | ||  ||    ||  | |||                             
ATTGAAGTTATTTTGCGACAAGGACTATCCCGACAAGCCTCCAACTGTTAGATTCCACTCCCGAATCAATATGACTCATGTGAACTCAGAGACAGGATTGgtaagatttatttgaccatttcacaactttcatgatcttcttttctgtgtatgttgcgtttctc-tagttacgtcaatctgctgtcatata-gagtaagcggccgcgaatgtaatatgttatccag

upper sequence: GRMZM2G071010_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ16450 (Selaginella moellendorffii), 5'ss of exon 3
GCTGAAGTTGTTTTGTGACAAGGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaa------tctttgtcatgtctgtgtgagcaactgagcatgcacaaggggattcacacaactaatttgac-----tattggtgcatccgtgtag---------
 || ||||||||||| |||||||| |||||||| ||||||||    || | ||||   || |||||||||||||| |||||    || || |  ||  | ||||        | | | |  | | | ||      ||     | | | ||  |||  |    |   |||||       | || |    ||||   |         
ACTTAAGTTGTTTTGCGACAAGGAGTATCCGGACAAGCCACCGAGCGTGAAATTCATGTCGAGAATCAACATGACCTGCGTCTCCCAAGACAATGGCGTTgtaagttgttcttcttttagttttctatgtctttttgtttcggaagatggctattaccttttcctctttgagggaagcactgatttgcccgtcatgatttctcag

upper sequence: GRMZM2G071010_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ17929 (Selaginella moellendorffii), 5'ss of exon 3
GCTGAAGTTGTTTTGTGACAAGGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaa------tctttgtcatgtctgtgtgagcaactgagcatgcacaaggggattcacacaactaatttgac-----tattggtgcatccgtgtag---------
 || ||||||||||| |||||||| |||||||| ||||||||    || | ||||   || |||||||||||||| |||||    || || |  ||  | ||||        | | | |  | | | ||      ||     | | | ||  |||  |    |   |||||       | || |    ||||   |         
ACTTAAGTTGTTTTGCGACAAGGAGTATCCGGACAAGCCACCGAGCGTGAAATTCATGTCGAGAATCAACATGACCTGCGTCTCCCAAGACAATGGCGTTgtaagttgttcttcttttagttttctatgtctttttgtttcggaagatggccattaccttctcctctttgagggaagcactgatttgcccgtcatgatttctcag

upper sequence: GRMZM2G071010_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ33318 (Selaginella moellendorffii), 5'ss of exon 3
GCTGAAGTTGTTTTGTGACAAGGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttgtcatgtc-tgtgtgagcaactgagcatgcacaaggggattcacacaactaatttgactattggtgcatccgtgtag--------------
 || |||||||  || ||||| ||||||||||| |||||||||  |||  ||||||| ||  ||||||||||||| |||||||||| |||||| |||   |||| |  |  ||| |  | | |  ||      |  |       ||  ||  ||| | | || | |||  ||  | |  |                    
ACTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGACTTGCGTTAATCGCGAGACTGGAGCTgtaagcactcgcattttgtttcttggctttgtggtctagtttctggtgtttccactagtgatcttacttgtgcagtaagcactcgctttttttttttgca

upper sequence: GRMZM2G071010_T02 (Zea mays), 5'ss of exon 2
lower sequence: EFJ15952 (Selaginella moellendorffii), 5'ss of exon 3
GCTGAAGTTGTTTTGTGACAAGGACTATCCGGAGAAGCCACCATCTGTCAGATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttgtcatgtc-tgtgtgagcaactgagcatgcacaaggggattcacacaactaatttgactattggtgcatccgtgtag--------------
||| |||||||  || ||||| ||||||||||| |||||||||  |||  ||||||| ||  ||||||||||||| |||||||||| |||||| |||   |||| |  |  ||| |  | | |  ||      |  |       ||  ||  ||| | | || | |||  ||  | |  |     |              
GCTTAAGTTGTACTGCGACAAAGACTATCCGGATAAGCCACCAAGTGTGCGATTCCATTCGCGAATCAACATGACTTGCGTTAATCGCGAGACTGGAGCTgtaagcactcgcattttgtttcttggctttgtggtctagtttctggtgtttccactagtgatcttacttgtgcagtaagcactcggcctccggtgttttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89756017|gb|DY686217.1|DY686217
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|91874027|gb|EB403984.1|EB403984
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|33092413|gb|CF052407.1|CF052407
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCCCGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|32805334|gb|CD957570.1|CD957570
EST:     TAATTACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: TAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|9733380|gb|BE512237.1|BE512237
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211058470|gb|FL105755.1|FL105755
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTTGCTAGCGAA
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTT-GCTAGCGAA
EST: gi|93013912|gb|EB639432.1|EB639432
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211435244|gb|FL105634.1|FL105634
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACAC
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTT-GGTTTGCTAGCGAACTGGCAGCGGGACTACAC
EST: gi|211435250|gb|FL105640.1|FL105640
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTT-GCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|15554192|gb|BI644190.1|BI644190
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGNGAAGTTTGGNTTTGCTTAGCNNGAACTGGCAGCGGGACT
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAG-GAAGTTTGG-TTTGCT-AGC--GAACTGGCAGCGGGACT
EST: gi|211432637|gb|FL105618.1|FL105618
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|213192471|gb|FM190893.1|FM190893
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211052550|gb|FL105735.1|FL105735
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCCAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCNGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211052549|gb|FL105734.1|FL105734
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACAC
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAA-GTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACAC
EST: gi|32857652|gb|CD997333.1|CD997333
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211061440|gb|FL105771.1|FL105771
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|111433965|gb|EE298001.1|EE298001
EST:     AATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAAGAAAGTTTGGTTTTGCTAGCCGAAACTGGCAGCGGG
genomic: A-TTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAA-GTTTGGTTT-GCTAGC-GAA-CTGGCAGCGGG
EST: gi|32908045|gb|CF012858.1|CF012858
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|78081380|gb|DV509792.1|DV509792
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|5650118|gb|AI920478.1|AI920478
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCNCGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGGCTACNCG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|67042401|gb|CO468656.1|CO468656
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211058481|gb|FL105766.1|FL105766
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|9733381|gb|BE512238.1|BE512238
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|116829440|gb|EC867966.1|EC867966
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|5895802|gb|AW037048.1|AW037048
EST:     AACATGACATGCGTTAATCACGAGACAGGAGTG                         GGTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: AACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211043655|gb|FL105679.1|FL105679
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|32851339|gb|CD991020.1|CD991020
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GNTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|211046627|gb|FL105703.1|FL105703
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
EST: gi|32908043|gb|CF012856.1|CF012856
EST:     GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATG                         GTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG
genomic: GATTCCACTCAAGAATCAACATGACATGCGTTAATCACGAGACAGGAATGgtaatctttg ... atccgtgtagGTTGATCCAAGGAAGTTTGGTTTGCTAGCGAACTGGCAGCGGGACTACACG